Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002666.1

Orthogroup ID

OG0000992

Physical Location & Seq

Genomic Coordinates Reverse (-)

39025 .. 42932

Gene Structure 3908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002666.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgtgcgatctgattgagaagcaagggatttggccccgacccgactcggttcgacgagagagacggcaaaacctccaggaagacggcctggagattgatgccaatattttgcgttggttcataccgcgtatcggttttgcagtctaccttcctccggctgaggacgctgcaatttcttccttgaagagagcactaactgctttgaacactcatcttgcttccaacacgtacttagttgggcactatgtgacattggctgatatcattatgatatgtaatttaacactgggatttaaccggttgttggcaaaaacttttacctcggaatttcctcatgttgagagatacttttggacattggctaatcagcctaattttcgcaagatactgggtgaggtgaaacaagctgaatctgttccagctgttcagtcagtaaagaagccttctcagcctaaggaacctgcaaagaaagaggccaagaaagaagtgaagaaagaaccggcaaagcctaaagtagaagaggctctggaggaagaggcacccaagcccaaggcaaagaatcctcttgatcttttacctcctagcaagatgattctggatgaatggaaaaggctttattcaaacacaaagaccaacttccgtgaggttgctgtcaaaggcttctgggacatgtatgatccagagggttactccctttggttttgcgattacaaatacaacgatgaaaatacagtttcatttgtgactttgaacaaggtgggcggttttctgcagcgcatggatttggctcgtaaatatgcgtttgggaagatgttggtgattgggtctgttcctcctttcaaggtgaagggcttgtgtctgttccgtgggcaagaggttccccagttcataattgatgaatgttatgacatggaactgtatgattggtccaaggttgatataactgatgaggatcaaaaggagcgcgtgaaccagatgattgaagatcacgagccttttgagggggaggctttgttggatgctaaatgcttcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003746 GO:0003824 GO:0004364 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006412 GO:0006414 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010467 GO:0016020 GO:0016740 GO:0016765 GO:0019538 GO:0030054 GO:0030312 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko05134 map05134

Pfam Domains

Protein Families

EF1G GST_C GST_N

Protein Analysis

345

Amino Acids

39.87

Weight (kDa)

6.21

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09640 AT1G57720 AT1G57720
fragaria_vesca	FvH4_5g28250 FvH4_5g28250 FvH4_5g32590 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560 FvH4_7g28560
malus_domestica	MD08G1244100.v1.1 MD15G1403200.v1.1 MD15G1438400.v1.1
prunus_persica	Prupe.1G549300_v2.0.a1 Prupe.1G549300_v2.0.a1 Prupe.1G581500_v2.0.a1 Prupe.1G581500_v2.0.a1
pyrus_communis	pycom08g21180 pycom15g36060 pycom15g38640
rosa_chinensis	RchiOBHm_Chr7g0220411 RchiOBHm_Chr7g0229581 RchiOBHm_Chr7g0229711 RchiOBHm_Chr7g0230101 RchiOBHm_Chr7g0230191
rosa_laevigata	RLG00000001508 RLG00000001510
rosa_multiflora	Rmu_sc0000693.1_g000058 Rmu_sc0000851.1_g000010 Rmu_sc0001621.1_g000005 Rmu_sc0001918.1_g000014 Rmu_sc0002666.1_g000007 Rmu_sc0002822.1_g000020 Rmu_sc0002822.1_g000031 Rmu_sc0004110.1_g000004 Rmu_ssc0000189.1_g000051
rosa_roxburghii	Rroxscaffold_3G00230290 Rroxscaffold_3G00230310 Rroxscaffold_3G00239390
rosa_rugosa	Rorug07G0193900 Rorug07G0259200 Rorug07G0259700 Rorug07G0259900 Rorug07G0260000
rosa_samantha	Rh7AG334900 Rh7AG408700 Rh7AG409300 Rh7AG409800 Rh7BG325900 Rh7BG387800 Rh7BG388100 Rh7BG388200 Rh7BG388600 Rh7CG352600 Rh7CG427700
rosa_wichuraiana	Rw0G018580 Rw0G022570 Rw7G028550 Rw7G033930 Rw7G033980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	127, 966
AciI	CCGC	2 cut(s)	125, 762
AclWI	GGATC	2 cut(s)	671, 960
AcsI	RAATTY	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	4 cut(s)	131, 154, 304, 1001
AflIII	ACRYGT	2 cut(s)	225, 669
AgeI	ACCGGT	1 cut(s)	297
AgsI	TTSAA	7 cut(s)	184, 205, 621, 751, 841, 983, 1033
AjnI	CCWGG	2 cut(s)	75, 87
AluBI	AGCT	2 cut(s)	407, 422
AluI	AGCT	2 cut(s)	407, 422
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	671, 960
AoxI	GGCC	3 cut(s)	32, 85, 474
ApeKI	GCWGC	2 cut(s)	167, 772
ApoI	RAATTY	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	414
AspLEI	GCGC	2 cut(s)	777, 966
AspS9I	GGNCC	2 cut(s)	33, 927
AsuHPI	GGTGA	4 cut(s)	404, 409, 829, 856
AvaII	GGWCC	1 cut(s)	927
AxyI	CCTNAGG	1 cut(s)	453
BaeGI	GKGCMC	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	538
BauI	CACGAG	1 cut(s)	989
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	193
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	154, 784
BceAI	ACGGC	2 cut(s)	80, 100
BciT130I	CCWGG	2 cut(s)	77, 89
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	2 cut(s)	168, 773
BlsI	GCNGC	2 cut(s)	169, 774
Bme1390I	CCNGG	2 cut(s)	77, 89
Bme18I	GGWCC	1 cut(s)	927
BmgT120I	GGNCC	2 cut(s)	33, 927
BmiI	GGNNCC	4 cut(s)	35, 459, 540, 879
BmrFI	CCNGG	2 cut(s)	77, 89
BmrI	ACTGGG	3 cut(s)	296, 398, 877
BmsI	GCATC	2 cut(s)	88, 1009
BmuI	ACTGGG	3 cut(s)	296, 398, 877
BpiI	GAAGAC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	3 cut(s)	59, 110, 548
Bpu10I	CCTNAGC	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	951
BsaJI	CCNNGG	4 cut(s)	321, 549, 865, 930
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	998, 1028
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 154, 304, 1001
Bse118I	RCCGGY	2 cut(s)	297, 499
Bse1I	ACTGG	3 cut(s)	291, 393, 883
Bse21I	CCTNAGG	1 cut(s)	453
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	2 cut(s)	77, 89
BseDI	CCNNGG	4 cut(s)	321, 549, 865, 930
BseGI	GGATG	2 cut(s)	604, 1024
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	4 cut(s)	131, 154, 304, 1001
BseMII	CTCAG	2 cut(s)	150, 461
BseNI	ACTGG	3 cut(s)	291, 393, 883
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	154, 784
Bsh1236I	CGCG	2 cut(s)	127, 966
BshFI	GGCC	3 cut(s)	34, 87, 476
BshNI	GGYRCC	1 cut(s)	538
BshTI	ACCGGT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	155, 298, 500
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	4 cut(s)	131, 154, 304, 1001
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	34, 87, 476
Bsp1286I	GDGCHC	2 cut(s)	193, 243
Bsp143I	GATC	5 cut(s)	7, 568, 676, 952, 985
BspACI	CCGC	2 cut(s)	125, 762
BspANI	GGCC	3 cut(s)	34, 87, 476
BspCNI	CTCAG	2 cut(s)	151, 460
BspFNI	CGCG	2 cut(s)	127, 966
BspLI	GGNNCC	4 cut(s)	35, 459, 540, 879
BspMAI	CTGCAG	1 cut(s)	774
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	2 cut(s)	671, 960
BspT107I	GGYRCC	1 cut(s)	538
BsrFI	RCCGGY	2 cut(s)	297, 499
BsrI	ACTGG	3 cut(s)	291, 393, 883
BssAI	RCCGGY	2 cut(s)	297, 499
BssECI	CCNNGG	4 cut(s)	321, 549, 865, 930
BssMI	GATC	5 cut(s)	7, 568, 676, 952, 985
BssSI	CACGAG	1 cut(s)	989
BssT1I	CCWWGG	2 cut(s)	549, 930
Bst2BI	CACGAG	1 cut(s)	989
Bst2UI	CCWGG	2 cut(s)	77, 89
Bst4CI	ACNGT	2 cut(s)	733, 918
Bst6I	CTCTTC	3 cut(s)	179, 513, 528
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	159, 232, 447, 453
BstDSI	CCRYGG	1 cut(s)	865
BstF5I	GGATG	2 cut(s)	604, 1024
BstFNI	CGCG	2 cut(s)	127, 966
BstHHI	GCGC	2 cut(s)	777, 966
BstKTI	GATC	5 cut(s)	10, 571, 679, 955, 988
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	5 cut(s)	7, 568, 676, 952, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 197, 448
BstNI	CCWGG	2 cut(s)	77, 89
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	75, 87
BstSFI	CTRYAG	1 cut(s)	770
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	2 cut(s)	127, 966
BstV1I	GCAGC	2 cut(s)	154, 784
BstV2I	GAAGAC	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	34, 87, 476
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	2 cut(s)	604, 1024
BtsIMutI	CAGTG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	469
CfoI	GCGC	2 cut(s)	777, 966
Cfr10I	RCCGGY	2 cut(s)	297, 499
Cfr13I	GGNCC	2 cut(s)	33, 927
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	229
CspAI	ACCGGT	1 cut(s)	297
CviAII	CATG	4 cut(s)	335, 670, 778, 910
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	4 cut(s)	159, 232, 447, 453
DpnI	GATC	5 cut(s)	9, 570, 678, 954, 987
DpnII	GATC	5 cut(s)	7, 568, 676, 952, 985
DraIII	CACNNNGTG	1 cut(s)	247
Eam1104I	CTCTTC	3 cut(s)	179, 513, 528
EarI	CTCTTC	3 cut(s)	179, 513, 528
Eco130I	CCWWGG	2 cut(s)	549, 930
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	927
Eco81I	CCTNAGG	1 cut(s)	453
EcoRII	CCWGG	2 cut(s)	75, 87
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	2 cut(s)	549, 930
ErhI	CCWWGG	2 cut(s)	549, 930
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	4 cut(s)	338, 673, 781, 913
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	4 cut(s)	334, 669, 777, 909
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	168, 773
FokI	GGATG	2 cut(s)	611, 1031
Fsp4HI	GCNGC	2 cut(s)	168, 773
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	2 cut(s)	776, 965
GluI	GCNGC	2 cut(s)	168, 773
GsuI	CTGGAG	3 cut(s)	59, 110, 548
HaeIII	GGCC	3 cut(s)	34, 87, 476
HapII	CCGG	3 cut(s)	155, 298, 500
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	2 cut(s)	777, 966
Hin1II	CATG	4 cut(s)	338, 673, 781, 913
Hin6I	GCGC	2 cut(s)	775, 964
HinP1I	GCGC	2 cut(s)	775, 964
HinfI	GANTC	4 cut(s)	44, 410, 559, 592
HpaII	CCGG	3 cut(s)	155, 298, 500
HphI	GGTGA	4 cut(s)	404, 409, 829, 856
Hpy166II	GTNNAC	2 cut(s)	145, 970
Hpy188I	TCNGA	2 cut(s)	12, 325
Hpy188III	TCNNGA	5 cut(s)	527, 566, 596, 680, 989
Hpy8I	GTNNAC	2 cut(s)	145, 970
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	3 cut(s)	158, 453, 841
HpyCH4III	ACNGT	2 cut(s)	733, 918
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	4 cut(s)	140, 170, 464, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 197, 448
HpyF3I	CTNAG	4 cut(s)	159, 232, 447, 453
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	4 cut(s)	338, 673, 781, 913
HspAI	GCGC	2 cut(s)	775, 964
Kzo9I	GATC	5 cut(s)	7, 568, 676, 952, 985
LmnI	GCTCC	1 cut(s)	961
Lsp1109I	GCAGC	2 cut(s)	154, 784
LweI	GCATC	2 cut(s)	88, 1009
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	247, 686, 742
MalI	GATC	5 cut(s)	9, 570, 678, 954, 987
MboI	GATC	5 cut(s)	7, 568, 676, 952, 985
MboII	GAAGA	8 cut(s)	92, 168, 196, 502, 530, 545, 820, 995
MhlI	GDGCHC	2 cut(s)	193, 243
MluCI	AATT	5 cut(s)	171, 277, 326, 373, 891
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	246, 996
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	2 cut(s)	281, 294
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	155, 298, 500
MspR9I	CCNGG	2 cut(s)	77, 89
MvaI	CCWGG	2 cut(s)	77, 89
MvnI	CGCG	2 cut(s)	127, 966
MwoI	GCNNNNNNNGC	3 cut(s)	164, 197, 448
NdeII	GATC	5 cut(s)	7, 568, 676, 952, 985
NlaIII	CATG	4 cut(s)	338, 673, 781, 913
NlaIV	GGNNCC	4 cut(s)	35, 459, 540, 879
NmuCI	GTSAC	2 cut(s)	247, 742
NspI	RCATGY	1 cut(s)	673
PciI	ACATGT	1 cut(s)	669
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	410, 559, 592
PfoI	TCCNGGA	1 cut(s)	75
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	169, 774
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	228
PscI	ACATGT	1 cut(s)	669
Psp6I	CCWGG	2 cut(s)	75, 87
PspGI	CCWGG	2 cut(s)	75, 87
PspN4I	GGNNCC	4 cut(s)	35, 459, 540, 879
PspPI	GGNCC	2 cut(s)	33, 927
PstI	CTGCAG	1 cut(s)	774
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	281, 294
SatI	GCNGC	2 cut(s)	168, 773
Sau3AI	GATC	5 cut(s)	7, 568, 676, 952, 985
Sau96I	GGNCC	2 cut(s)	33, 927
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	77, 89
SduI	GDGCHC	2 cut(s)	193, 243
SfaNI	GCATC	2 cut(s)	88, 1009
SfcI	CTRYAG	1 cut(s)	770
SinI	GGWCC	1 cut(s)	927
Sse9I	AATT	5 cut(s)	171, 277, 326, 373, 891
SsiI	CCGC	2 cut(s)	125, 762
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	75, 87
StyI	CCWWGG	2 cut(s)	549, 930
TaaI	ACNGT	2 cut(s)	733, 918
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	52
TasI	AATT	5 cut(s)	171, 277, 326, 373, 891
TfiI	GAWTC	3 cut(s)	410, 559, 592
Tru1I	TTAA	2 cut(s)	281, 294
Tru9I	TTAA	2 cut(s)	281, 294
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	247, 742
TseI	GCWGC	2 cut(s)	167, 772
Tsp45I	GTSAC	2 cut(s)	247, 742
TspDTI	ATGAA	6 cut(s)	109, 615, 726, 738, 877, 912
TspGWI	ACGGA	2 cut(s)	629, 854
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	927
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.