Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

4294055 .. 4294540

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12615.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAAATCGCTGGAATTGAACAGGATACCTACATCCTAAATTTGCTGATAAATGCTTTCTGTCACTGCTCGCAGCTGAGATTTGCTTTGTCTACATTAGCGAGAATGTTGAAAGCTGGCCATGAGCCTGATGTGTTCACATTTACCACGTTGCTCAGGCCTTTTTGTCTTGAGGAAAATGCTTCTGTTTATGATGCACCAACTTTGTTTAAGAATATGAAAGCTATGGGTTACAAACCTAATGTTGTGACATATAACACTGTCATTAAAGGTCTGCTTAATGGTAATATGATTTCTCAAGTGCCTGGTGTACTTGATCAAATGTTTGAAAGGGGTTGTCAACCAAATGCAGTTACTAAATCTACATTTATAAGCGGACTCTGCAAGCAAGATCTTCATGGAAGTGCCATATTGTTGCTTAGAAAAATGGAGAATGATAACGAAGATGTCACAACAAAAAAAAAAATACTCATTCACATCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

161

Amino Acids

18.01

Weight (kDa)

7.64

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	9 - 56	1.9e-10	PPR repeat family
PPR_3	PF13812	40 - 90	2.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	65 - 93	2.2e-07	PPR repeat family
PPR_3	PF13812	69 - 121	9.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	80 - 129	1.2e-14	PPR repeat family
PPR_1	PF12854	111 - 144	1.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	20, 112, 329
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	3 cut(s)	76, 116, 224
AluI	AGCT	3 cut(s)	76, 116, 224
AoxI	GGCC	2 cut(s)	118, 158
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	2 cut(s)	191, 282
BseBI	CCWGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	68, 169
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	120, 160
BsnI	GGCC	2 cut(s)	120, 160
Bsp143I	GATC	2 cut(s)	316, 391
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	2 cut(s)	120, 160
BspCNI	CTCAG	2 cut(s)	69, 168
BssMI	GATC	2 cut(s)	316, 391
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	71, 118, 386
BstDEI	CTNAG	3 cut(s)	77, 155, 419
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	319, 394
BstMBI	GATC	2 cut(s)	316, 391
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuI	GTATCC	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	120, 160
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 258
Cac8I	GCNNGC	3 cut(s)	71, 118, 386
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	122, 398
CviJI	RGCY	6 cut(s)	76, 116, 120, 127, 160, 224
CviKI_1	RGCY	6 cut(s)	76, 116, 120, 127, 160, 224
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	3 cut(s)	77, 155, 419
DpnI	GATC	2 cut(s)	318, 393
DpnII	GATC	2 cut(s)	316, 391
EaeI	YGGCCR	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	125, 401
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	2 cut(s)	121, 397
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	120, 160
Hin1II	CATG	2 cut(s)	125, 401
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HinfI	GANTC	1 cut(s)	378
Hpy166II	GTNNAC	4 cut(s)	93, 138, 311, 341
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	4 cut(s)	93, 138, 311, 341
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	3 cut(s)	197, 350, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	3 cut(s)	77, 155, 419
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	125, 401
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	316, 391
LpnPI	CCDG	6 cut(s)	8, 102, 141, 142, 291, 318
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	5 cut(s)	62, 230, 247, 352, 448
MalI	GATC	2 cut(s)	318, 393
MboI	GATC	2 cut(s)	316, 391
MboII	GAAGA	2 cut(s)	386, 455
MflI	RGATCY	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	120
MluCI	AATT	2 cut(s)	15, 40
MluNI	TGGCCA	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	1 cut(s)	166
Mox20I	TGGCCA	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	120
MseI	TTAA	3 cut(s)	210, 267, 279
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	381
NdeII	GATC	2 cut(s)	316, 391
NlaIII	CATG	2 cut(s)	125, 401
NmuCI	GTSAC	3 cut(s)	62, 247, 448
PceI	AGGCCT	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	210, 267, 279
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	316, 391
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	7 cut(s)	32, 78, 118, 152, 226, 241, 274
SfaNI	GCATC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	170, 297
SmoI	CTYRAG	2 cut(s)	170, 297
Sse9I	AATT	2 cut(s)	15, 40
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	1 cut(s)	152
TasI	AATT	2 cut(s)	15, 40
TatI	WGTACW	1 cut(s)	310
Tru1I	TTAA	3 cut(s)	210, 267, 279
Tru9I	TTAA	3 cut(s)	210, 267, 279
TscAI	CASTG	2 cut(s)	71, 265
TseFI	GTSAC	3 cut(s)	62, 247, 448
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	3 cut(s)	62, 247, 448
TspDTI	ATGAA	2 cut(s)	233, 386
TspRI	CASTG	2 cut(s)	71, 265
XapI	RAATTY	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.