Rh4DG179700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001472
Physical Location & Seq
Reverse (-)
35711306 .. 35713236
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG179700.1

Sequence Viewer

Length: 507 bp
ATGTATAATCACTTGATGGGTATTGCTCACTTCCAACCTGATGATAGTACAATGAATGTTGTCATTAATTGCTTGTGTCGTCTGAATCAGGCCGACTTGGGTCTCTCTGCTTTAGCAATTTCCCTTAAACATGGTTTTCAACCTCAGGCTTATTCTCTGAATCTTTTGGTTCGTGGGCTTTGCAAGAGCAGCTCTCTGGCTGCAGCAGTGGATTTGTTCTGGAAAATGGAACACCGCGAATGCGAATGGGATGAATTCACTTATGGTATCATAATTAATGAGTTATTCAAAGCTGGGAAGAGTACTGATGGGATGAAGATACTTGAGCACATGTATGGAAATGGAAGGTTTAAGCCCGGCCTAGATTGTTACAATCCAATCATTGACAGCCTTTGTAAAGAAAGACGGCTAGATGAGGTTTTGACCCTGTTACATGATATGATCAACAGAAGTGTTGTACCAAATGCCATCACTTACAAATCATTGTTTCATGGGTTATTGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

168

Amino Acids

18.98

Weight (kDa)

6.36

Isoelectric Point (pI)

20.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 13 - 62 9.3e-06 PPR repeat family
PPR_2 PF13041 49 - 97 2.1e-09 PPR repeat family
PPR_2 PF13041 123 - 166 3.5e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 237
AciI CCGC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 254
AfaI GTAC 3 cut(s) 49, 304, 459
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 2 cut(s) 140, 289
AluBI AGCT 2 cut(s) 192, 293
AluI AGCT 2 cut(s) 192, 293
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 2 cut(s) 90, 358
ApeKI GCWGC 3 cut(s) 189, 200, 203
ApoI RAATTY 1 cut(s) 254
AseI ATTAAT 2 cut(s) 66, 276
AsuC2I CCSGG 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 187, 201, 215
BccI CCATC 3 cut(s) 10, 302, 476
BceAI ACGGC 1 cut(s) 422
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 2 cut(s) 362, 410
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 3 cut(s) 190, 201, 204
BlsI GCNGC 3 cut(s) 191, 202, 205
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 357
BoxI GACNNNNGTC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 107
Bse21I CCTNAGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 256, 318
BseMII CTCAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 187, 201, 215
BseYI CCCAGC 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 92, 360
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 107
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 2 cut(s) 92, 360
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 1 cut(s) 235
BspANI GGCC 2 cut(s) 92, 360
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 107
BssMI GATC 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 256, 318
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 334
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 187, 201, 215
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 2 cut(s) 92, 360
BtsCI GGATG 2 cut(s) 256, 318
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Csp6I GTAC 3 cut(s) 48, 303, 458
CviAII CATG 4 cut(s) 131, 331, 434, 491
CviQI GTAC 3 cut(s) 48, 303, 458
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 107
Eco81I CCTNAGG 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 254
FaeI CATG 4 cut(s) 134, 334, 437, 494
FaiI YATR 9 cut(s) 6, 132, 264, 272, 332, 336, 435, 440, 492
FatI CATG 4 cut(s) 130, 330, 433, 490
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 190, 201, 204
FokI GGATG 2 cut(s) 263, 325
Fsp4HI GCNGC 3 cut(s) 190, 201, 204
FspBI CTAG 2 cut(s) 362, 410
GluI GCNGC 3 cut(s) 190, 201, 204
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 2 cut(s) 92, 360
HapII CCGG 1 cut(s) 357
Hin1II CATG 4 cut(s) 134, 334, 437, 494
HinfI GANTC 2 cut(s) 85, 160
HpaII CCGG 1 cut(s) 357
Hpy188I TCNGA 2 cut(s) 84, 159
Hpy188III TCNNGA 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 183, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 4 cut(s) 134, 334, 437, 494
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 1 cut(s) 441
LpnPI CCDG 8 cut(s) 51, 74, 131, 182, 205, 279, 370, 440
Lsp1109I GCAGC 3 cut(s) 187, 201, 215
MaeI CTAG 2 cut(s) 362, 410
MaeIII GTNAC 2 cut(s) 368, 429
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 2 cut(s) 310, 328
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 67, 117, 254, 273
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 2 cut(s) 153, 409
MseI TTAA 4 cut(s) 66, 126, 276, 351
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 245
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 357
NdeII GATC 1 cut(s) 441
NlaIII CATG 4 cut(s) 134, 334, 437, 494
NspI RCATGY 1 cut(s) 334
PciI ACATGT 1 cut(s) 330
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 85, 160
PkrI GCNGC 3 cut(s) 191, 202, 205
PscI ACATGT 1 cut(s) 330
PshAI GACNNNNGTC 1 cut(s) 99
PshBI ATTAAT 2 cut(s) 66, 276
PspFI CCCAGC 1 cut(s) 293
PstI CTGCAG 1 cut(s) 205
RsaI GTAC 3 cut(s) 49, 304, 459
RsaNI GTAC 3 cut(s) 48, 303, 458
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 4 cut(s) 66, 126, 276, 351
SatI GCNGC 3 cut(s) 190, 201, 204
Sau3AI GATC 1 cut(s) 441
ScaI AGTACT 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 330
SetI ASST 6 cut(s) 40, 145, 194, 295, 350, 420
SfcI CTRYAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 4 cut(s) 67, 117, 254, 273
SsiI CCGC 1 cut(s) 235
SspMI CTAG 2 cut(s) 362, 410
StyD4I CCNGG 1 cut(s) 355
TasI AATT 4 cut(s) 67, 117, 254, 273
TatI WGTACW 2 cut(s) 47, 302
TfiI GAWTC 2 cut(s) 85, 160
Tru1I TTAA 4 cut(s) 66, 126, 276, 351
Tru9I TTAA 4 cut(s) 66, 126, 276, 351
TscAI CASTG 1 cut(s) 213
TseI GCWGC 3 cut(s) 189, 200, 203
TspDTI ATGAA 4 cut(s) 68, 267, 329, 479
TspRI CASTG 1 cut(s) 213
VspI ATTAAT 2 cut(s) 66, 276
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 334
XspI CTAG 2 cut(s) 362, 410
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.