Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Forward (+)

27661351 .. 27661838

Gene Structure 488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1145400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCGGTGGCAATGCTTGACGGGCTATGCAAAAGACGGGCTGGTCCAGGAGGCCATGAAGCTTTTTGGGTCGATGCGCGAAAAGGGTTCGATTCCTGAGGTTGTTATATACACTGCTGTGGTTGATGGGTTTTGCAAAGCGCAGAAGTTCGAAGATGCTAAGAGGATTTTCAGGAAGATGCAGAGCAATGGGATTGTTCCTAATGCTTTTAGTTACACTGTGTTGATACAGGGGTTGTATAGAGCTAATAATTTGGAGGATGCTGCTGAATTTTGCAGCGAAATGTTGGAAGCCGGTCACTCGCCCAATGTAGCTACTTTTGTCGGGTTGATTGATGTCATTTGTAAGGAAAATGATATGGAAGAAGCTGAGAGTGTTATTGGGAAGTTGAAGCAGAAGGGGTATTTGGTTAATGAGAAGGCTGTTAAAGAGTTTTTGGACAAAAAGGCGCCATTTTCGCCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

156

Amino Acids

17.37

Weight (kDa)

6.6

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	15 - 96	1.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	21 - 77	9.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	28 - 61	3.7e-08	PPR repeat
PPR_2	PF13041	32 - 80	8.8e-16	PPR repeat family
PPR	PF01535	35 - 65	1.5e-07	PPR repeat
PPR_3	PF13812	55 - 116	6.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	63 - 95	3.4e-07	PPR repeat
PPR_2	PF13041	71 - 116	5.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	448
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	45
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	61, 245, 314, 368
AluI	AGCT	4 cut(s)	61, 245, 314, 368
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	263, 276
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	3 cut(s)	78, 142, 451
AspS9I	GGNCC	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	218, 251
BanI	GGYRCC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	250, 288
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	47
BfoI	RGCGCY	1 cut(s)	452
BisI	GCNGC	2 cut(s)	264, 277
BlsI	GCNGC	2 cut(s)	265, 278
Bme1390I	CCNGG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	4 cut(s)	63, 145, 168, 250
Bpu14I	TTCGAA	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	96
Bse3DI	GCAATG	2 cut(s)	17, 193
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	265
BseMI	GCAATG	2 cut(s)	17, 193
BseMII	CTCAG	2 cut(s)	87, 360
BseXI	GCAGC	2 cut(s)	250, 288
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	294
BsnI	GGCC	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	150
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	2 cut(s)	88, 361
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	17, 193
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	461
BssNI	GRCGYC	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	449
BstBI	TTCGAA	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	96, 159, 369
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	3 cut(s)	78, 142, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 457
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	250, 288
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 216
CfoI	GCGC	3 cut(s)	78, 142, 451
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	43
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	9 cut(s)	24, 40, 53, 61, 245, 293, 314, 368, 422
CviKI_1	RGCY	9 cut(s)	24, 40, 53, 61, 245, 293, 314, 368, 422
DdeI	CTNAG	3 cut(s)	96, 159, 369
DinI	GGCGCC	1 cut(s)	450
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	43
Eco81I	CCTNAGG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	450
EheI	GGCGCC	1 cut(s)	450
FaeI	CATG	1 cut(s)	58
FaiI	YATR	6 cut(s)	27, 56, 107, 109, 240, 359
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	264, 277
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	264, 277
GlaI	GCGC	3 cut(s)	77, 141, 450
GluI	GCNGC	2 cut(s)	264, 277
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	3 cut(s)	78, 142, 451
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	3 cut(s)	76, 140, 449
HinP1I	GCGC	3 cut(s)	76, 140, 449
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	294
Hpy188III	TCNNGA	2 cut(s)	95, 172
HpyAV	CCTTC	2 cut(s)	391, 412
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	29, 135, 181, 276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 457
HpyF3I	CTNAG	3 cut(s)	96, 159, 369
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	3 cut(s)	76, 140, 449
KasI	GGCGCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	26, 32, 59, 108, 157, 215, 307
Lsp1109I	GCAGC	2 cut(s)	250, 288
LweI	GCATC	4 cut(s)	63, 145, 168, 250
MaeIII	GTNAC	2 cut(s)	212, 296
MboII	GAAGA	3 cut(s)	164, 187, 374
MluCI	AATT	2 cut(s)	250, 269
Mly113I	GGCGCC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	43, 91, 156, 250, 456
MseI	TTAA	2 cut(s)	411, 426
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	21, 457
NarI	GGCGCC	1 cut(s)	449
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	265, 278
PluTI	GGCGCC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	411, 426
SatI	GCNGC	2 cut(s)	264, 277
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	6 cut(s)	63, 102, 247, 316, 370, 467
SfaNI	GCATC	4 cut(s)	63, 145, 168, 250
SfoI	GGCGCC	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	150
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	250, 269
SsiI	CCGC	1 cut(s)	4
SspDI	GGCGCC	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	3 cut(s)	71, 89, 150
TasI	AATT	2 cut(s)	250, 269
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	411, 426
Tru9I	TTAA	2 cut(s)	411, 426
TscAI	CASTG	2 cut(s)	118, 223
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	2 cut(s)	263, 276
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	118, 223
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.