Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Forward (+)

22752945 .. 22756331

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAAATCTAGAAACACTGGCCAACTAGAGAAGCATTTGAGAGACCCAGAAATACCAAAATCAGTGAGTAATCTCAAGGATGCCTTGAAGGTGTTGGATGAAATGCTTCAAAGGCGTCCTCTGCCTTGGGTTATCCGTTTCAATCAAATGCTGGGTCAACTCGTGAAATTGAAGCATTATTCGGATGGTCATTGCTTTGGGTTTGTCAAGCCCATGTTGAAAATATGGTTATGGACGAACCTTTGTGAGAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

85

Amino Acids

10.13

Weight (kDa)

9.69

Isoelectric Point (pI)

27.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	115
AgsI	TTSAA	5 cut(s)	88, 110, 142, 172, 220
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
Asp700I	GAANNNNTTC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	21
BauI	CACGAG	1 cut(s)	161
BccI	CCATC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	9, 26
BmsI	GCATC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	3 cut(s)	85, 103, 190
BseMI	GCAATG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	125
BssNI	GRCGYC	1 cut(s)	115
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	85, 103, 190
BstMAI	GTCTC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 121
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	85, 103, 190
BtsIMutI	CAGTG	2 cut(s)	15, 69
CseI	GACGC	1 cut(s)	104
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	2 cut(s)	21, 211
CviKI_1	RGCY	2 cut(s)	21, 211
EaeI	YGGCCR	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	215, 226, 232
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	1 cut(s)	213
FokI	GGATG	3 cut(s)	92, 110, 197
FspBI	CTAG	2 cut(s)	9, 26
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	21
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	1 cut(s)	217
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	9, 163
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 121
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	3, 60, 137
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	9, 26
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	112, 121
NlaIII	CATG	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	151
SetI	ASST	2 cut(s)	93, 243
SfaNI	GCATC	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	2 cut(s)	9, 26
StyI	CCWWGG	1 cut(s)	125
TasI	AATT	1 cut(s)	167
TscAI	CASTG	2 cut(s)	22, 69
TspDTI	ATGAA	2 cut(s)	17, 114
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	22, 69
XbaI	TCTAGA	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	9, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.