Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8232951.1

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Forward (+)

71 .. 759

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8232951.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 689 bp

atgaaagtgaatggtgttattccgagctcttttacctattcgattctgatagatggtttttgcaaaacaaatagagttgagaaagctttgttgcttcttgaagagatggatgaaaaagggttccccccttgtccagctgcgtattgcagcctgatcaacagtcttggaaaagcaaagcggtatgaagctgcaaatgagttatttcaagaattgaaagaaaactgtggacgtgcaagtgctagagtatatgccgtgatgattaaacatttcggaaaatgtgggcgtcttgatgaagctctggatctttttcacgagatgaagaaacttggatgcaatccggatgtatatacttataatgccctcatgtcagggatggtcagggctggtatgatagatgaggcactttccttgcttaaaaccatggaagaaaggggctgtgttgcagacataaactcacaaaacatcattttaaatggcttggctagggcaggtggcccaaagagggctttagaaatgttttcaaagatgaagcattccaagattcaaccagatgcagtttcttataacactattcttggttgtctcagtcgagctggcttgcttgaagaggctgcaaagctgatgaaagagatgacttcaaaaggttttcaatatgatctcatcacctactcatcaatacttgaggcagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

230

Amino Acids

25.43

Weight (kDa)

8.05

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	354, 564
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccIII	TCCGGA	1 cut(s)	337
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	8 cut(s)	101, 206, 214, 522, 545, 605, 639, 650
AjiI	CACGTC	1 cut(s)	230
AluBI	AGCT	7 cut(s)	27, 86, 137, 188, 296, 593, 619
AluI	AGCT	7 cut(s)	27, 86, 137, 188, 296, 593, 619
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	337
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	4 cut(s)	137, 147, 188, 611
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	124, 159, 175, 598
BccI	CCATC	3 cut(s)	47, 100, 367
BceAI	ACGGC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	2 cut(s)	240, 483
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	4 cut(s)	138, 148, 189, 612
BlsI	GCNGC	4 cut(s)	139, 149, 190, 613
BmgBI	CACGTC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	122
BmsI	GCATC	2 cut(s)	320, 541
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
BseAI	TCCGGA	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	4 cut(s)	115, 335, 346, 378
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	598
BseXI	GCAGC	4 cut(s)	124, 159, 175, 598
BshFI	GGCC	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	153, 301, 655
Bsp19I	CCATGG	1 cut(s)	420
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	597
BspEI	TCCGGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	3 cut(s)	153, 301, 655
BssNI	GRCGYC	1 cut(s)	283
BssSI	CACGAG	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	161, 224
Bst6I	CTCTTC	2 cut(s)	96, 600
BstACI	GRCGYC	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	595, 599
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	4 cut(s)	115, 335, 346, 378
BstKTI	GATC	3 cut(s)	156, 304, 658
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	3 cut(s)	153, 301, 655
BstV1I	GCAGC	4 cut(s)	124, 159, 175, 598
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	495
BtgI	CCRYGG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	230
BtsCI	GGATG	4 cut(s)	115, 335, 346, 378
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	2 cut(s)	595, 599
Cfr13I	GGNCC	1 cut(s)	494
CseI	GACGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	364, 421
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	3 cut(s)	155, 303, 657
DpnII	GATC	3 cut(s)	153, 301, 655
DraI	TTTAAA	1 cut(s)	471
Eam1104I	CTCTTC	2 cut(s)	96, 600
EarI	CTCTTC	2 cut(s)	96, 600
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	2 cut(s)	367, 424
FatI	CATG	2 cut(s)	363, 420
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	138, 148, 189, 612
FokI	GGATG	4 cut(s)	122, 342, 353, 385
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	138, 148, 189, 612
FspBI	CTAG	2 cut(s)	240, 483
GluI	GCNGC	4 cut(s)	138, 148, 189, 612
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	367, 424
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	43, 541
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	3 cut(s)	24, 48, 272
Hpy188III	TCNNGA	6 cut(s)	98, 206, 287, 299, 311, 338
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	161, 224
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	8 cut(s)	63, 147, 191, 233, 333, 443, 554, 614
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	367, 424
Kpn2I	TCCGGA	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	153, 301, 655
Lsp1109I	GCAGC	4 cut(s)	124, 159, 175, 598
LweI	GCATC	2 cut(s)	320, 541
MaeI	CTAG	2 cut(s)	240, 483
MaeII	ACGT	1 cut(s)	229
MalI	GATC	3 cut(s)	155, 303, 657
MboI	GATC	3 cut(s)	153, 301, 655
MboII	GAAGA	4 cut(s)	113, 331, 437, 617
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	5 cut(s)	371, 391, 495, 601, 676
MroI	TCCGGA	1 cut(s)	337
MseI	TTAA	3 cut(s)	261, 414, 470
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	532
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	3 cut(s)	153, 301, 655
NlaIII	CATG	2 cut(s)	367, 424
NlaIV	GGNNCC	1 cut(s)	122
PaqCI	CACCTGC	1 cut(s)	479
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	43, 541
PkrI	GCNGC	4 cut(s)	139, 149, 190, 613
PsiI	TTATAA	2 cut(s)	354, 564
Psp124BI	GAGCTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	261, 414, 470
SatI	GCNGC	4 cut(s)	138, 148, 189, 612
Sau3AI	GATC	3 cut(s)	153, 301, 655
Sau96I	GGNCC	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	2 cut(s)	320, 541
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	2 cut(s)	240, 483
SstI	GAGCTC	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	161, 224
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	41, 589
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	43, 541
Tru1I	TTAA	3 cut(s)	261, 414, 470
Tru9I	TTAA	3 cut(s)	261, 414, 470
TseI	GCWGC	4 cut(s)	137, 147, 188, 611
TspDTI	ATGAA	7 cut(s)	17, 126, 198, 306, 332, 542, 638
XspI	CTAG	2 cut(s)	240, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.