Prupe.1G166700_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001472
Physical Location & Seq
Reverse (-)
13538898 .. 13542404
3507 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G166700.1

Sequence Viewer

Length: 1692 bp
TCTCTCTCAATTCTTAGTGAGGTGTTCTTAGCTATTTGCTCCAATAATTGTACACATTTATTGCTCGAAAAGCCAGTTTTGCTCTTTTGCTGTCAATCGTTGTCATACTATTTGGTAAAAACGCGTTGTAAATCTGGTAATCTTGGGTTAGATGAAGCACTGGGTCACTTCGATTCCGTAATTCAAATGAAACCCATTCCCTCGATTTGGGCTATTAATCATTTGTTTGGGGCACTCTCGAAGATGAATCAGTGTTCCACTGTAGTTTCTATGTATAAACAGATGCTGGCTTGTGTTGGCTTACACCCGGAAGTCCATACACTGAGTGTTGTTATCAATTGCTTGTGCCGTATGAATCGGGTGGACTTGGGTTTCTCTGTTTTAGCAACTATCCTTAAACATGGTCTTCAGCCCAATGCTTATACTTTGAATGCTTTGCTTCATGGGGTTTGCAAGTATAGGTCGCTCTCTGAGGCAATGGAGTTACTCCAGAAAATAGAAGAGAAAGGATTAGCATGCTGTGAAATCACTTACGCTACTATAATTAATGGGTTGTGCAGAGCTGGGAAAACATGTATGGCGCTTGAGATACTCGAGCAAATGTATGAAGATGGAAGGTTTAAGCCTGACCCTCAATGCTATAATCCAATCATTGACCGCTTATGCAAAGAAAGAAGAACAGATGAGGCGCTGACCCTATTTCGAGATATGATCAACAAAAATGTTGCGCCGGATATCGTCAGTTACACTTCATTAATTTATGGATTATGCAACATGGGTCTTTGGACACGAGCACTTGCTCTGTTTGAAATGATGAATAAGAAAGGCAGAAAGCCTGATGTTGTCACTTTTAATTCCATAATTTCTGCAGCATGCAAGTCTGGTAAGTGGGAAGAAGCTGTGCGGCTATTTAGAAACATGATTGATTGTGGCGCCTTCCCTAATATTGTTACATTCAATTCTGTGTTGGATGCTTTGTGCAAGGAAGGGAAGACGGCAGAGGCACTTAACCTTATGGAAGAAATCCTCTGCCATTCCGCGCAATGGAAAGAAGCCACAAGGTTGTTTAATAGAATGCTGGATGAAGGAATTGCACCAGATGTTGTAACCTTTAACACTGTAATACATGCTCTTTGCAAGGAGAGACGGGCCGAGGAAGCGCTCTCCGTGTTAGAGCTAATGTCCCAAAGAGGTATGAGGCTTAACATTTTCACCTACAACTCTCTAATTTATGGCATGTGCCTTACAGATCAATGGGCTGAAGCCACAAGGTTGTTTGATGAAATGGTAGTTCAGGGAGTCTTACCTGATATCATAACTTTGACAATACTTTTGGATGCTCTCTTCCAAGGAGGGATGCCAGAAGAGGCTCATAAAGTAGTTGAGGCCAGAGTTAAATATGGTATGGAGCTGAGCAAAATAACTTGCAGTATGCTAATTGATGGTTATTGTATTCGTGGCAAAATGGATAAGGCAAAGAAGGTCATTGATTTAATGGTGATAAAAGATCATGTCCCTGATATTGCTTCTTGCTATAAAGCCTTGGTCAACGGCTATATGCAAGCTAAAAGGATAAGTGAAGCTTTGAGGCTCGTTGAGGAAATGATCGAAAAAGGGGTGATGCCTGATTTGGAAACCCTAAAAGCTTTGAGAGATTTGCGTCCTAAAAGGCATGTTGTATCTGCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

564

Amino Acids

63.31

Weight (kDa)

7.09

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 932
AccII CGCG 2 cut(s) 124, 1040
AciI CCGC 3 cut(s) 658, 904, 1038
AcuI CTGAAG 2 cut(s) 392, 1281
AcyI GRCGYC 1 cut(s) 933
AdeI CACNNNGTG 1 cut(s) 326
AfaI GTAC 1 cut(s) 52
AfeI AGCGCT 1 cut(s) 1161
AfiI CCNNNNNNNGG 2 cut(s) 207, 1044
AflIII ACRYGT 2 cut(s) 122, 572
AgsI TTSAA 4 cut(s) 185, 430, 809, 958
AluBI AGCT 8 cut(s) 32, 563, 899, 1177, 1411, 1565, 1583, 1646
AluI AGCT 8 cut(s) 32, 563, 899, 1177, 1411, 1565, 1583, 1646
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 1 cut(s) 1138
AlwNI CAGNNNCTG 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 593
Aor51HI AGCGCT 1 cut(s) 1161
AoxI GGCC 2 cut(s) 1149, 1386
ApeKI GCWGC 1 cut(s) 869
ArsI GACNNNNNNTTYG 2 cut(s) 1315, 1347
AseI ATTAAT 3 cut(s) 216, 546, 755
AspLEI GCGC 6 cut(s) 583, 691, 730, 935, 1042, 1162
AspS9I GGNCC 1 cut(s) 1149
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 1204, 1510, 1630
AvaI CYCGRG 1 cut(s) 593
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 932
BauI CACGAG 1 cut(s) 789
BbsI GAAGAC 2 cut(s) 398, 998
Bbv12I GWGCWC 1 cut(s) 796
BbvI GCAGC 1 cut(s) 881
BccI CCATC 2 cut(s) 605, 1436
BceAI ACGGC 3 cut(s) 333, 1011, 1567
BclI TGATCA 1 cut(s) 711
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 1138
BfmI CTRYAG 3 cut(s) 261, 867, 1683
BfoI RGCGCY 4 cut(s) 584, 692, 936, 1163
BisI GCNGC 2 cut(s) 870, 905
BlpI GCTNAGC 1 cut(s) 1412
BlsI GCNGC 2 cut(s) 871, 906
Bme1390I CCNGG 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 1149
BmiI GGNNCC 1 cut(s) 934
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 170
BmsI GCATC 5 cut(s) 273, 961, 1327, 1347, 1611
BmuI ACTGGG 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 398, 998
BpmI CTGGAG 1 cut(s) 473
Bpu1102I GCTNAGC 1 cut(s) 1412
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 933
BsaJI CCNNGG 3 cut(s) 1152, 1348, 1542
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 1044
Bse1I ACTGG 2 cut(s) 74, 165
Bse3DI GCAATG 2 cut(s) 483, 1049
BseDI CCNNGG 3 cut(s) 1152, 1348, 1542
BseGI GGATG 4 cut(s) 976, 1087, 1342, 1362
BseLI CCNNNNNNNGG 2 cut(s) 207, 1044
BseMI GCAATG 2 cut(s) 483, 1049
BseMII CTCAG 3 cut(s) 314, 462, 1403
BseNI ACTGG 2 cut(s) 74, 165
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 1 cut(s) 881
BseYI CCCAGC 1 cut(s) 563
BsgI GTGCAG 1 cut(s) 577
Bsh1236I CGCG 2 cut(s) 124, 1040
BshFI GGCC 2 cut(s) 1151, 1388
BshNI GGYRCC 1 cut(s) 932
BsiHKAI GWGCWC 1 cut(s) 796
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 2 cut(s) 308, 731
BslFI GGGAC 2 cut(s) 1168, 1499
BslI CCNNNNNNNGG 2 cut(s) 207, 1044
BsmAI GTCTC 1 cut(s) 1138
BsmBI CGTCTC 1 cut(s) 1138
BsmFI GGGAC 2 cut(s) 1168, 1499
BsmI GAATGC 2 cut(s) 436, 1080
BsnI GGCC 2 cut(s) 1151, 1388
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 235, 796
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 4 cut(s) 711, 1249, 1507, 1605
Bsp1720I GCTNAGC 1 cut(s) 1412
BspACI CCGC 3 cut(s) 658, 904, 1038
BspANI GGCC 2 cut(s) 1151, 1388
BspCNI CTCAG 3 cut(s) 315, 463, 1404
BspFNI CGCG 2 cut(s) 124, 1040
BspLI GGNNCC 1 cut(s) 934
BspMAI CTGCAG 2 cut(s) 871, 1687
BspT107I GGYRCC 1 cut(s) 932
BsrDI GCAATG 2 cut(s) 483, 1049
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 2 cut(s) 74, 165
BssECI CCNNGG 3 cut(s) 1152, 1348, 1542
BssMI GATC 4 cut(s) 711, 1249, 1507, 1605
BssNI GRCGYC 1 cut(s) 933
BssSI CACGAG 1 cut(s) 789
BssT1I CCWWGG 2 cut(s) 1348, 1542
Bst2BI CACGAG 1 cut(s) 789
Bst4CI ACNGT 2 cut(s) 262, 1120
Bst6I CTCTTC 3 cut(s) 495, 1349, 1359
BstACI GRCGYC 1 cut(s) 933
BstAUI TGTACA 1 cut(s) 50
BstC8I GCNNGC 4 cut(s) 288, 517, 874, 1563
BstDEI CTNAG 5 cut(s) 14, 28, 323, 471, 1412
BstF5I GGATG 4 cut(s) 976, 1087, 1342, 1362
BstFNI CGCG 2 cut(s) 124, 1040
BstH2I RGCGCY 4 cut(s) 584, 692, 936, 1163
BstHHI GCGC 6 cut(s) 583, 691, 730, 935, 1042, 1162
BstKTI GATC 4 cut(s) 714, 1252, 1510, 1608
BstMAI GTCTC 1 cut(s) 1138
BstMBI GATC 4 cut(s) 711, 1249, 1507, 1605
BstMWI GCNNNNNNNGC 3 cut(s) 70, 79, 1157
BstNSI RCATGY 6 cut(s) 519, 576, 876, 1130, 1240, 1676
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 3 cut(s) 261, 867, 1683
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 2 cut(s) 124, 1040
BstV1I GCAGC 1 cut(s) 881
BstV2I GAAGAC 2 cut(s) 398, 998
BsuRI GGCC 2 cut(s) 1151, 1388
BtsCI GGATG 4 cut(s) 976, 1087, 1342, 1362
BtsIMutI CAGTG 5 cut(s) 158, 257, 258, 320, 1116
Cac8I GCNNGC 4 cut(s) 288, 517, 874, 1563
CaiI CAGNNNCTG 1 cut(s) 286
CfoI GCGC 6 cut(s) 583, 691, 730, 935, 1042, 1162
Cfr13I GGNCC 1 cut(s) 1149
CseI GACGC 1 cut(s) 1649
Csp6I GTAC 1 cut(s) 51
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 5 cut(s) 14, 28, 323, 471, 1412
DinI GGCGCC 1 cut(s) 934
DpnI GATC 4 cut(s) 713, 1251, 1509, 1607
DpnII GATC 4 cut(s) 711, 1249, 1507, 1605
DraIII CACNNNGTG 1 cut(s) 326
Eam1104I CTCTTC 3 cut(s) 495, 1349, 1359
EarI CTCTTC 3 cut(s) 495, 1349, 1359
Eco130I CCWWGG 2 cut(s) 1348, 1542
Eco32I GATATC 2 cut(s) 736, 1312
Eco47III AGCGCT 1 cut(s) 1161
Eco57I CTGAAG 2 cut(s) 392, 1281
Eco88I CYCGRG 1 cut(s) 593
EcoRV GATATC 2 cut(s) 736, 1312
EcoT14I CCWWGG 2 cut(s) 1348, 1542
EgeI GGCGCC 1 cut(s) 934
EheI GGCGCC 1 cut(s) 934
ErhI CCWWGG 2 cut(s) 1348, 1542
Esp3I CGTCTC 1 cut(s) 1138
FalI AAGNNNNNCTT 2 cut(s) 1567, 1599
FaqI GGGAC 2 cut(s) 1168, 1499
FbaI TGATCA 1 cut(s) 711
Fnu4HI GCNGC 2 cut(s) 870, 905
FokI GGATG 4 cut(s) 983, 1094, 1349, 1369
Fsp4HI GCNGC 2 cut(s) 870, 905
GlaI GCGC 6 cut(s) 582, 690, 729, 934, 1041, 1161
GluI GCNGC 2 cut(s) 870, 905
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 1 cut(s) 473
HaeII RGCGCY 4 cut(s) 584, 692, 936, 1163
HaeIII GGCC 2 cut(s) 1151, 1388
HapII CCGG 2 cut(s) 308, 731
HgaI GACGC 1 cut(s) 1649
HhaI GCGC 6 cut(s) 583, 691, 730, 935, 1042, 1162
Hin1I GRCGYC 1 cut(s) 933
Hin6I GCGC 6 cut(s) 581, 689, 728, 933, 1040, 1160
HinP1I GCGC 6 cut(s) 581, 689, 728, 933, 1040, 1160
HincII GTYRAC 1 cut(s) 1549
HindII GTYRAC 1 cut(s) 1549
HindIII AAGCTT 2 cut(s) 1581, 1644
HinfI GANTC 4 cut(s) 173, 247, 355, 1299
HpaII CCGG 2 cut(s) 308, 731
HphI GGTGA 3 cut(s) 1204, 1510, 1630
Hpy166II GTNNAC 3 cut(s) 53, 364, 1549
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 3 cut(s) 238, 490, 704
Hpy8I GTNNAC 3 cut(s) 53, 364, 1549
HpyAV CCTTC 5 cut(s) 609, 946, 980, 1079, 1474
HpyCH4III ACNGT 2 cut(s) 262, 1120
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 79, 1157
HpyF3I CTNAG 5 cut(s) 14, 28, 323, 471, 1412
Hsp92I GRCGYC 1 cut(s) 933
HspAI GCGC 6 cut(s) 581, 689, 728, 933, 1040, 1160
KasI GGCGCC 1 cut(s) 932
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 4 cut(s) 711, 1249, 1507, 1605
LmnI GCTCC 2 cut(s) 44, 1408
Lsp1109I GCAGC 1 cut(s) 881
LweI GCATC 5 cut(s) 273, 961, 1327, 1347, 1611
MaeIII GTNAC 6 cut(s) 164, 483, 743, 844, 949, 1105
MalI GATC 4 cut(s) 713, 1251, 1509, 1607
MboI GATC 4 cut(s) 711, 1249, 1507, 1605
MfeI CAATTG 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 235, 796
MluI ACGCGT 1 cut(s) 122
Mly113I GGCGCC 1 cut(s) 933
MlyI GAGTC 1 cut(s) 1308
MmeI TCCRAC 1 cut(s) 948
MspI CCGG 2 cut(s) 308, 731
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 337
Mva1269I GAATGC 2 cut(s) 436, 1080
MvnI CGCG 2 cut(s) 124, 1040
MwoI GCNNNNNNNGC 3 cut(s) 70, 79, 1157
NarI GGCGCC 1 cut(s) 933
NciI CCSGG 1 cut(s) 308
NdeII GATC 4 cut(s) 711, 1249, 1507, 1605
NlaIV GGNNCC 1 cut(s) 934
NmeAIII GCCGAG 1 cut(s) 1177
NmuCI GTSAC 2 cut(s) 164, 844
NspI RCATGY 6 cut(s) 519, 576, 876, 1130, 1240, 1676
PaeI GCATGC 2 cut(s) 519, 876
PaeR7I CTCGAG 1 cut(s) 593
PciI ACATGT 1 cut(s) 572
PctI GAATGC 2 cut(s) 436, 1080
PfeI GAWTC 3 cut(s) 173, 247, 355
PkrI GCNGC 2 cut(s) 871, 906
PleI GAGTC 1 cut(s) 1307
PluTI GGCGCC 1 cut(s) 936
PpsI GAGTC 1 cut(s) 1307
PscI ACATGT 1 cut(s) 572
PshBI ATTAAT 3 cut(s) 216, 546, 755
PspFI CCCAGC 1 cut(s) 563
PspN4I GGNNCC 1 cut(s) 934
PspPI GGNCC 1 cut(s) 1149
PspXI VCTCGAGB 1 cut(s) 593
PstI CTGCAG 2 cut(s) 871, 1687
PstNI CAGNNNCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SatI GCNGC 2 cut(s) 870, 905
Sau3AI GATC 4 cut(s) 711, 1249, 1507, 1605
Sau96I GGNCC 1 cut(s) 1149
SchI GAGTC 1 cut(s) 1308
ScrFI CCNGG 1 cut(s) 308
SduI GDGCHC 2 cut(s) 235, 796
SfaNI GCATC 5 cut(s) 273, 961, 1327, 1347, 1611
SfcI CTRYAG 3 cut(s) 261, 867, 1683
SfoI GGCGCC 1 cut(s) 934
Sfr274I CTCGAG 1 cut(s) 593
SlaI CTCGAG 1 cut(s) 593
SmlI CTYRAG 2 cut(s) 584, 593
SmoI CTYRAG 2 cut(s) 584, 593
SphI GCATGC 2 cut(s) 519, 876
SsiI CCGC 3 cut(s) 658, 904, 1038
SspDI GGCGCC 1 cut(s) 932
SspI AATATT 1 cut(s) 946
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 2 cut(s) 1348, 1542
TaaI ACNGT 2 cut(s) 262, 1120
TaqI TCGA 7 cut(s) 66, 171, 203, 239, 594, 703, 1608
TatI WGTACW 1 cut(s) 50
TauI GCSGC 1 cut(s) 907
TfiI GAWTC 3 cut(s) 173, 247, 355
TscAI CASTG 5 cut(s) 165, 257, 265, 327, 1123
TseFI GTSAC 2 cut(s) 164, 844
TseI GCWGC 1 cut(s) 869
Tsp45I GTSAC 2 cut(s) 164, 844
TspGWI ACGGA 2 cut(s) 166, 1156
TspRI CASTG 5 cut(s) 165, 257, 265, 327, 1123
VspI ATTAAT 3 cut(s) 216, 546, 755
XceI RCATGY 6 cut(s) 519, 576, 876, 1130, 1240, 1676
XhoI CTCGAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.