Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

1699417 .. 1700265

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1015700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATTCAAACCAAACCCTTGCCCTCTATTTGGACTTTCAATTGTTTGTTTGGGGCACTCTCCAAGATGAAGCAATATTCTGCTGTGGTTTCTATGTGTAAACAGTTGATGGGTTGCGCTCAGTTCCGACTTGATGTCAGTACGATGACTATGTTTCTGAATTACATGTGCCGTCTTAACCGGATGGACTTGGGTTTCTCTGTTTTAGCAATTACCCTTAAATACGGTCTTCAACCCAACGCTCATTCTATAAATACTTTGCTCCATGGACTTTGCAAGAATAGTTCTCTAGCCAAGGCAATGGAGTTCTTCCAGGAAATAGAAGAGAAGGGATACACATGCGATGAAATCACTTATGCTACAATAATTAATGGGTTATGCAAAGCTGGGAAAACTTCTAAGGCACTCGAGATACTAATGAAGATGTGGGAAGATGGAAGGTTGAAGCCCAACCAAGATTGCTACAATCCCATCATCGATAGCCTCTGTAAAGAAAGACGAATAGGCGAGGCCTTGACCCTATTTCGAGATATGATCAGCAAAAATGTTGTACCGAATGTTTTCAGTTATGCCACATTGATTCATGGGTTATGCAACACGAGCCGCTGGGAAGAAGTGCTCTCTCTTTTTGGAGGAATGGTAGATCAAGGAGTCAAGCCTAATGTTGTCACCTACAACACTCTAATTTATGCGATGTGCCAATCGGGGAGGTTTGAAAAAGCCAAGAGCTTCTTGATTTGCATGCTTAACAGTGGAATTTCGCCCGATGTATACACATATATGTTCTTATCGGCCGTCTTTGCAAGGAAGAAAGAATTCAAGAAGCACTTACTCTGTTGGAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

283

Amino Acids

32.07

Weight (kDa)

9.03

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	45 - 93	9.7e-09	PPR repeat family
PPR_1	PF12854	76 - 107	3.5e-06	PPR repeat
PPR_2	PF13041	79 - 128	6.2e-14	PPR repeat family
PPR_long	PF17177	94 - 193	3.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	104 - 160	2.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	110 - 142	1.1e-09	PPR repeat
PPR_2	PF13041	115 - 156	4.7e-06	PPR repeat family
PPR	PF01535	117 - 146	1.3e-06	PPR repeat
PPR_1	PF12854	148 - 178	5.2e-08	PPR repeat
PPR_2	PF13041	150 - 199	3.3e-15	PPR repeat family
PPR_long	PF17177	159 - 275	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	174 - 232	2.9e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	185 - 234	9.6e-16	PPR repeat family
PPR_1	PF12854	217 - 248	7.1e-11	PPR repeat
PPR_2	PF13041	220 - 263	1.1e-13	PPR repeat family
PPR	PF01535	223 - 253	2.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	771
AciI	CCGC	1 cut(s)	604
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	2 cut(s)	756, 815
AfaI	GTAC	2 cut(s)	142, 552
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	8, 40, 233, 445, 716, 820
AhdI	GACNNNNNGTC	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	386, 729
AluI	AGCT	2 cut(s)	386, 729
Alw21I	GWGCWC	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	510, 792
ApoI	RAATTY	2 cut(s)	756, 815
AseI	ATTAAT	1 cut(s)	369
Asp700I	GAANNNNTTC	2 cut(s)	560, 815
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	661
AvaI	CYCGRG	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	621
BccI	CCATC	4 cut(s)	103, 178, 428, 479
BceAI	ACGGC	2 cut(s)	156, 779
BciT130I	CCWGG	1 cut(s)	314
BciVI	GTATCC	1 cut(s)	326
BclI	TGATCA	1 cut(s)	534
BfaI	CTAG	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	604
BlsI	GCNGC	1 cut(s)	605
Bme1390I	CCNGG	1 cut(s)	314
BmeRI	GACNNNNNGTC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	265, 294
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	265, 294
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	58
BseX3I	CGGCCG	1 cut(s)	792
BseYI	CCCAGC	2 cut(s)	386, 606
Bsh1285I	CGRYCG	1 cut(s)	795
BshFI	GGCC	2 cut(s)	512, 794
BshVI	ATCGAT	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	795
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	30
BsnI	GGCC	2 cut(s)	512, 794
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	58, 621
Bsp143I	GATC	2 cut(s)	534, 643
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	2 cut(s)	512, 794
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	265, 294
BssMI	GATC	2 cut(s)	534, 643
BssNAI	GTATAC	1 cut(s)	772
BssSI	CACGAG	1 cut(s)	598
BssT1I	CCWWGG	2 cut(s)	265, 294
Bst1107I	GTATAC	1 cut(s)	772
Bst2BI	CACGAG	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	105, 227, 752
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	743
BstDEI	CTNAG	2 cut(s)	120, 399
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	537, 646
BstMBI	GATC	2 cut(s)	534, 643
BstMCI	CGRYCG	1 cut(s)	795
BstMWI	GCNNNNNNNGC	2 cut(s)	600, 800
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	3 cut(s)	169, 342, 745
BstSCI	CCNGG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstZ17I	GTATAC	1 cut(s)	772
BstZI	CGGCCG	1 cut(s)	792
Bsu15I	ATCGAT	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	512, 794
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	265
BtgZI	GCGATG	2 cut(s)	357, 707
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	1 cut(s)	743
CfoI	GCGC	1 cut(s)	119
ClaI	ATCGAT	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	141, 551
CviAII	CATG	5 cut(s)	166, 266, 339, 584, 742
CviQI	GTAC	2 cut(s)	141, 551
DdeI	CTNAG	2 cut(s)	120, 399
DpnI	GATC	2 cut(s)	536, 645
DpnII	GATC	2 cut(s)	534, 643
DriI	GACNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	792
EagI	CGGCCG	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	792
Eco130I	CCWWGG	2 cut(s)	265, 294
Eco147I	AGGCCT	1 cut(s)	512
Eco52I	CGGCCG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	815
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	265, 294
ErhI	CCWWGG	2 cut(s)	265, 294
FaeI	CATG	5 cut(s)	169, 269, 342, 587, 745
FalI	AAGNNNNNCTT	4 cut(s)	716, 748, 812, 844
FatI	CATG	5 cut(s)	165, 265, 338, 583, 741
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	1 cut(s)	604
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	604
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	604
GsaI	CCCAGC	2 cut(s)	390, 610
HaeIII	GGCC	2 cut(s)	512, 794
HapII	CCGG	1 cut(s)	181
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	169, 269, 342, 587, 745
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	4, 580, 651
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	2 cut(s)	101, 772
Hpy188I	TCNGA	2 cut(s)	128, 159
Hpy188III	TCNNGA	4 cut(s)	409, 527, 733, 820
Hpy8I	GTNNAC	2 cut(s)	101, 772
HpyAV	CCTTC	2 cut(s)	322, 432
HpyCH4III	ACNGT	3 cut(s)	105, 227, 752
HpyCH4V	TGCA	5 cut(s)	276, 381, 594, 741, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	600, 800
HpyF3I	CTNAG	2 cut(s)	120, 399
Hsp92II	CATG	5 cut(s)	169, 269, 342, 587, 745
HspAI	GCGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	534, 643
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	5 cut(s)	194, 299, 326, 372, 592
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	2 cut(s)	536, 645
MboI	GATC	2 cut(s)	534, 643
MboII	GAAGA	7 cut(s)	221, 301, 335, 433, 443, 623, 820
MfeI	CAATTG	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	58, 621
MluCI	AATT	7 cut(s)	40, 160, 210, 366, 684, 756, 815
MlyI	GAGTC	1 cut(s)	660
MmeI	TCCRAC	2 cut(s)	151, 818
MnlI	CCTC	5 cut(s)	34, 494, 502, 626, 702
MroXI	GAANNNNTTC	2 cut(s)	560, 815
MseI	TTAA	4 cut(s)	177, 219, 369, 747
MslI	CAYNNNNRTG	1 cut(s)	779
MspA1I	CMGCKG	1 cut(s)	606
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	600, 800
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	2 cut(s)	534, 643
NlaIII	CATG	5 cut(s)	169, 269, 342, 587, 745
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	3 cut(s)	169, 342, 745
PaeI	GCATGC	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	512
PciI	ACATGT	1 cut(s)	165
PdmI	GAANNNNTTC	2 cut(s)	560, 815
PfeI	GAWTC	2 cut(s)	4, 580
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	605
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PscI	ACATGT	1 cut(s)	165
PshBI	ATTAAT	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	2 cut(s)	386, 606
PspGI	CCWGG	1 cut(s)	312
RsaI	GTAC	2 cut(s)	142, 552
RsaNI	GTAC	2 cut(s)	141, 551
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	4 cut(s)	177, 219, 369, 747
SatI	GCNGC	1 cut(s)	604
Sau3AI	GATC	2 cut(s)	534, 643
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	58, 621
SetI	ASST	5 cut(s)	388, 443, 674, 713, 731
Sfr274I	CTCGAG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	745
Sse9I	AATT	7 cut(s)	40, 160, 210, 366, 684, 756, 815
SseBI	AGGCCT	1 cut(s)	512
SsiI	CCGC	1 cut(s)	604
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	512
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	265, 294
TaaI	ACNGT	3 cut(s)	105, 227, 752
TaqI	TCGA	3 cut(s)	408, 477, 526
TasI	AATT	7 cut(s)	40, 160, 210, 366, 684, 756, 815
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	4, 580
Tru1I	TTAA	4 cut(s)	177, 219, 369, 747
Tru9I	TTAA	4 cut(s)	177, 219, 369, 747
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	667
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	83, 360, 434, 572
TspRI	CASTG	1 cut(s)	757
VspI	ATTAAT	1 cut(s)	369
XapI	RAATTY	2 cut(s)	756, 815
XceI	RCATGY	3 cut(s)	169, 342, 745
XhoI	CTCGAG	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	771
XmnI	GAANNNNTTC	2 cut(s)	560, 815
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.