PPR repeat
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 55 | 1.1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 37 | 2.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.6e-15 | PPR repeat family |
| PPR | PF01535 | 12 - 41 | 2.6e-06 | PPR repeat |
| PPR_3 | PF13812 | 32 - 90 | 2.8e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 39 - 71 | 6.1e-09 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 9.7e-18 | PPR repeat family |
| PPR_1 | PF12854 | 75 - 93 | 1.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 78 - 113 | 4.7e-08 | PPR repeat family |
| PPR | PF01535 | 81 - 111 | 1.6e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 69 |
| AciI | CCGC | 3 cut(s) | 54, 67, 69 |
| AcuI | CTGAAG | 1 cut(s) | 110 |
| AfaI | GTAC | 1 cut(s) | 215 |
| AflIII | ACRYGT | 1 cut(s) | 210 |
| AgsI | TTSAA | 1 cut(s) | 364 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| BaeGI | GKGCMC | 1 cut(s) | 24 |
| BbsI | GAAGAC | 1 cut(s) | 113 |
| BclI | TGATCA | 1 cut(s) | 150 |
| BmrI | ACTGGG | 1 cut(s) | 231 |
| BmuI | ACTGGG | 1 cut(s) | 231 |
| BpiI | GAAGAC | 1 cut(s) | 113 |
| BsaJI | CCNNGG | 1 cut(s) | 67 |
| Bse1I | ACTGG | 2 cut(s) | 226, 324 |
| BseDI | CCNNGG | 1 cut(s) | 67 |
| BseGI | GGATG | 1 cut(s) | 335 |
| BseNI | ACTGG | 2 cut(s) | 226, 324 |
| BseSI | GKGCMC | 1 cut(s) | 24 |
| Bsh1236I | CGCG | 1 cut(s) | 69 |
| BsmI | GAATGC | 1 cut(s) | 359 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| Bsp143I | GATC | 1 cut(s) | 150 |
| BspACI | CCGC | 3 cut(s) | 54, 67, 69 |
| BspFNI | CGCG | 1 cut(s) | 69 |
| BsrI | ACTGG | 2 cut(s) | 226, 324 |
| BssECI | CCNNGG | 1 cut(s) | 67 |
| BssMI | GATC | 1 cut(s) | 150 |
| BstDSI | CCRYGG | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 335 |
| BstFNI | CGCG | 1 cut(s) | 69 |
| BstKTI | GATC | 1 cut(s) | 153 |
| BstMBI | GATC | 1 cut(s) | 150 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 60 |
| BstNSI | RCATGY | 1 cut(s) | 214 |
| BstSLI | GKGCMC | 1 cut(s) | 24 |
| BstUI | CGCG | 1 cut(s) | 69 |
| BstV2I | GAAGAC | 1 cut(s) | 113 |
| BtgI | CCRYGG | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 335 |
| BtsIMutI | CAGTG | 2 cut(s) | 86, 331 |
| Cfr42I | CCGCGG | 1 cut(s) | 70 |
| Csp6I | GTAC | 1 cut(s) | 214 |
| CviAII | CATG | 2 cut(s) | 211, 286 |
| CviQI | GTAC | 1 cut(s) | 214 |
| DpnI | GATC | 1 cut(s) | 152 |
| DpnII | GATC | 1 cut(s) | 150 |
| Eco32I | GATATC | 1 cut(s) | 133 |
| Eco57I | CTGAAG | 1 cut(s) | 110 |
| EcoRV | GATATC | 1 cut(s) | 133 |
| FaeI | CATG | 2 cut(s) | 214, 289 |
| FatI | CATG | 2 cut(s) | 210, 285 |
| FauI | CCCGC | 2 cut(s) | 47, 62 |
| FbaI | TGATCA | 1 cut(s) | 150 |
| FokI | GGATG | 1 cut(s) | 342 |
| Hin1II | CATG | 2 cut(s) | 214, 289 |
| HincII | GTYRAC | 1 cut(s) | 228 |
| HindII | GTYRAC | 1 cut(s) | 228 |
| HpaI | GTTAAC | 1 cut(s) | 228 |
| Hpy166II | GTNNAC | 3 cut(s) | 170, 228, 335 |
| Hpy188III | TCNNGA | 1 cut(s) | 128 |
| Hpy8I | GTNNAC | 3 cut(s) | 170, 228, 335 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 86, 191, 359 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 60 |
| Hsp92II | CATG | 2 cut(s) | 214, 289 |
| Ksp22I | TGATCA | 1 cut(s) | 150 |
| KspAI | GTTAAC | 1 cut(s) | 228 |
| KspI | CCGCGG | 1 cut(s) | 70 |
| Kzo9I | GATC | 1 cut(s) | 150 |
| LmnI | GCTCC | 1 cut(s) | 293 |
| LpnPI | CCDG | 5 cut(s) | 141, 158, 207, 246, 337 |
| MaeIII | GTNAC | 1 cut(s) | 241 |
| MalI | GATC | 1 cut(s) | 152 |
| MboI | GATC | 1 cut(s) | 150 |
| MboII | GAAGA | 3 cut(s) | 113, 116, 189 |
| MfeI | CAATTG | 1 cut(s) | 192 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MluCI | AATT | 4 cut(s) | 28, 40, 192, 258 |
| MmeI | TCCRAC | 1 cut(s) | 271 |
| MnlI | CCTC | 2 cut(s) | 5, 102 |
| MseI | TTAA | 3 cut(s) | 156, 227, 257 |
| MslI | CAYNNNNRTG | 1 cut(s) | 146 |
| MspA1I | CMGCKG | 1 cut(s) | 69 |
| MunI | CAATTG | 1 cut(s) | 192 |
| Mva1269I | GAATGC | 1 cut(s) | 359 |
| MvnI | CGCG | 1 cut(s) | 69 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 60 |
| NdeII | GATC | 1 cut(s) | 150 |
| NlaIII | CATG | 2 cut(s) | 214, 289 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| NspI | RCATGY | 1 cut(s) | 214 |
| PciI | ACATGT | 1 cut(s) | 210 |
| PctI | GAATGC | 1 cut(s) | 359 |
| PscI | ACATGT | 1 cut(s) | 210 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| RsaI | GTAC | 1 cut(s) | 215 |
| RsaNI | GTAC | 1 cut(s) | 214 |
| RseI | CAYNNNNRTG | 1 cut(s) | 146 |
| SacII | CCGCGG | 1 cut(s) | 70 |
| SaqAI | TTAA | 3 cut(s) | 156, 227, 257 |
| Sau3AI | GATC | 1 cut(s) | 150 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SetI | ASST | 4 cut(s) | 16, 257, 349, 369 |
| Sfr303I | CCGCGG | 1 cut(s) | 70 |
| SgrBI | CCGCGG | 1 cut(s) | 70 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 146 |
| Sse9I | AATT | 4 cut(s) | 28, 40, 192, 258 |
| SsiI | CCGC | 3 cut(s) | 54, 67, 69 |
| SspI | AATATT | 1 cut(s) | 354 |
| TaqI | TCGA | 1 cut(s) | 381 |
| TasI | AATT | 4 cut(s) | 28, 40, 192, 258 |
| Tru1I | TTAA | 3 cut(s) | 156, 227, 257 |
| Tru9I | TTAA | 3 cut(s) | 156, 227, 257 |
| TscAI | CASTG | 2 cut(s) | 93, 331 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| TspDTI | ATGAA | 1 cut(s) | 197 |
| TspRI | CASTG | 2 cut(s) | 93, 331 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XceI | RCATGY | 1 cut(s) | 214 |