Rroxscaffold_5G00358080

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001472
Physical Location & Seq
Reverse (-)
38050535 .. 38052440
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358080.1

Sequence Viewer

Length: 1839 bp
ATGCCTTTGAAGGCGAGGATGTTCTCTACAATTGTCTCTGTAAGAGCCCCAGCGCTTCTCTACAAATGTAAGCCTCCTTTCCATTCTCTTTTTGGGTCTGTCAGAACCCAGTGTCGCTCTTCTTTTGCTGTCAATCATTCTCACATTGACGCCACTAATTTTGAGGAATTGGTAGACATTCGTTATAAATCTGGTTGTCTTAGGTTAGATGAAGCATTGGGTTACTTCAATTCCATGATTCAAATGAAACCCATCCCCTCCATCAGGGCTTTTAATGGTTTGTTTGGGGCACTCTCCAAGATGAAACATTACTCCACTGTTGTTTCTATGTGTAAGCAGCTGATGAGTACTGCTCACTTCCAACCTGATGTTTGTACAATAAGTATTATCATTAATTGCTTGTGCCGTCTGAATCGGGTGGACCTGGGTTTCTCTGCTCTAGGAATTGCTCTTAAACATGGTTTTCAACTTGGTGGTTATTCTCTAAATCCCTTGCTTCACAGGCTTTGCAAGAATAGCTGTCTTGCTGAAGCAGTGGAGCTGGTCCAGAAAATGGAAGATAAGGGATACACGTGTGATGTATTCACTTATGGTATCGTAATTAATGGGTTATGCAAAGCTGGGAAGACTACTAATGCAATCAAGATACTTGAGCAGATGTATGGTAATGGAAGGTTTAAGCCAAATTCGGATTGCTACAATCCAATCATTGACAGCCTTTGTAAAGAAAGAAATATCAAGCAGGCCTTGACCCTATTTGAAGATATGATCAGCAGAAGTGTAGTACCAGATGCCTACACTTATAATTCATTAATTCGTGGATTATGCAATATGGGTGATTGGGATAAAGTTCTCACTCTGTTCGAAACAATGAAGGATCAAGGAATTGCCCCCGATGTTGTCACCTTCAACACCCTAATATACGGACTTTGCCAATCAGGGAAGTGGGAAAAGGCCCAAAGATTCTTATCTTGCATGGTTGAGAGTGGAATTTCACCAGATGTGTATACCTACAATGCCCTAATCAGCAGTCATTGCAAGTCTGGTCAATGGGAAAAGGCTGTACAGTTATTTAAAAGTATGATTGAATGTGGAATCTTGCCCAATATTGTTACATTCAATGCTGTGTTGGATGCTTTATGCAAGGGAGGAAAAACAACAGAGGCACTTAATCTTGTGGAACAAATGATCCATAGAGAGGGGGCAACAAGCTTGCTTAATAGAATGAAGGATGAAGAAGTCCCACCAGATGTTGTAACCTTTAACTCTGTAATAGATGCCCTTTGCAAGAAGAGAAGGACCAAGGACGCCCTCACTGTTTTACAGGTAATGACTCAAAGAGATCTAAATCCTGACCGCATCACTTACAGCTGTCTAATTTATGGCATGTGCAATACATCACAATGGGGTGAAGCGACAAGGTTGTTTGATGAAATGGTAGGTCTGGGCATCTTGCCCAATATATTAACTTTGACAGAACTGTTTGATGCTCTCTCCAACGAAGGGATGACAGAAGAGGCTGGCAAAGCATTTGAAGAAAGATTTCAATATGGTATGGAGGTTAGCAAGATCTCATTCAACATGCTACTTCATGATTATTGTTTGCGTGGAAAAATTGACGAGGCAGAGAAGGTCTTCAGTTTTATGGTGTTGAGGGGTCATATTCCTGATATGTCTTCCTATACAACCTTAGTCAATAGCTATATAAAAGCTAACAGAATATATGAAGCTTTGAGGCTTGTTAAGGAAATGATCCAAAAGGGATTGATGCCTGATCTGCAAACACTGAAAACTTTGAGAAGTTCCAGTCCTAAAAGACATGCTGCATATGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

612

Amino Acids

68.8

Weight (kDa)

8.4

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 162 - 206 5.9e-11 PPR repeat family
PPR_3 PF13812 181 - 238 2.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 188 - 220 3.9e-10 PPR repeat
PPR_2 PF13041 193 - 234 1.3e-06 PPR repeat family
PPR_1 PF12854 226 - 256 4.4e-07 PPR repeat
PPR_2 PF13041 228 - 277 5.1e-17 PPR repeat family
TPR_24 PF23276 232 - 319 6.7e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 242 - 352 3.5e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 252 - 307 1.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 260 - 292 1.1e-08 PPR repeat
TPR_24 PF23276 261 - 361 3.2e-08 Fungal tetratrico peptide repeats
PPR PF01535 266 - 296 3.2e-08 PPR repeat
PPR_2 PF13041 268 - 312 2.5e-15 PPR repeat family
PPR_long PF17177 280 - 396 1e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 295 - 327 6.5e-12 PPR repeat
PPR_2 PF13041 298 - 347 8.4e-18 PPR repeat family
PPR PF01535 301 - 331 1.4e-07 PPR repeat
PPR_3 PF13812 325 - 380 7.8e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 330 - 361 4.8e-12 PPR repeat
PPR_2 PF13041 333 - 382 3.9e-18 PPR repeat family
PPR PF01535 336 - 366 2.1e-10 PPR repeat
MRP-S27 PF10037 337 - 401 5.4e-06 Mitochondrial 28S ribosomal protein S27
PPR_1 PF12854 365 - 396 1.3e-08 PPR repeat
PPR_2 PF13041 368 - 399 3.4e-06 PPR repeat family
PPR_2 PF13041 400 - 430 9e-07 PPR repeat family
PPR_3 PF13812 404 - 460 3.3e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 414 - 444 6e-09 PPR repeat
PPR_2 PF13041 416 - 465 5.1e-15 PPR repeat family
PPR_1 PF12854 448 - 480 5.1e-08 PPR repeat
PPR_2 PF13041 458 - 499 5.3e-07 PPR repeat family
PPR_1 PF12854 518 - 550 4.8e-06 PPR repeat
PPR_2 PF13041 524 - 567 1e-08 PPR repeat family
PPR_2 PF13041 556 - 599 5.7e-08 PPR repeat family
PPR PF01535 560 - 589 5.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 186, 804
AccB7I CCANNNNNTGG 1 cut(s) 553
AccI GTMKAC 2 cut(s) 174, 1007
AciI CCGC 1 cut(s) 1357
AclWI GGATC 3 cut(s) 885, 1183, 1747
AcsI RAATTY 2 cut(s) 685, 990
AcuI CTGAAG 2 cut(s) 549, 1621
AcvI CACGTG 1 cut(s) 573
AcyI GRCGYC 2 cut(s) 150, 1308
AfaI GTAC 4 cut(s) 349, 376, 786, 1065
AfeI AGCGCT 1 cut(s) 54
AfiI CCNNNNNNNGG 4 cut(s) 264, 553, 1198, 1503
AflIII ACRYGT 2 cut(s) 570, 572
AjnI CCWGG 1 cut(s) 423
AloI GAACNNNNNNTCC 2 cut(s) 1173, 1205
AluBI AGCT 9 cut(s) 340, 519, 541, 620, 1212, 1371, 1701, 1712, 1730
AluI AGCT 9 cut(s) 340, 519, 541, 620, 1212, 1371, 1701, 1712, 1730
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 3 cut(s) 885, 1183, 1747
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 2 cut(s) 744, 954
ApeKI GCWGC 2 cut(s) 337, 1823
ApoI RAATTY 2 cut(s) 685, 990
AseI ATTAAT 3 cut(s) 393, 603, 812
Asp700I GAANNNNTTC 2 cut(s) 1542, 1634
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 4 cut(s) 421, 544, 955, 1299
AsuHPI GGTGA 4 cut(s) 848, 895, 987, 1421
AsuII TTCGAA 1 cut(s) 864
AvaII GGWCC 3 cut(s) 421, 544, 1299
BaeGI GKGCMC 1 cut(s) 292
BaeI ACNNNNGTAYC 2 cut(s) 559, 592
BanII GRGCYC 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 573
BbsI GAAGAC 3 cut(s) 632, 1627, 1668
BbvI GCAGC 2 cut(s) 349, 1810
BccI CCATC 2 cut(s) 260, 269
BceAI ACGGC 1 cut(s) 390
BciT130I CCWGG 1 cut(s) 425
BciVI GTATCC 1 cut(s) 560
BclI TGATCA 1 cut(s) 768
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 440
BfoI RGCGCY 1 cut(s) 56
BfuI GTATCC 1 cut(s) 560
BglII AGATCT 2 cut(s) 1342, 1569
BisI GCNGC 2 cut(s) 338, 1824
BlsI GCNGC 2 cut(s) 339, 1825
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 3 cut(s) 421, 544, 1299
BmgT120I GGNCC 4 cut(s) 421, 544, 955, 1299
BmrFI CCNGG 1 cut(s) 425
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 7 cut(s) 781, 1123, 1267, 1368, 1458, 1477, 1758
BmuI ACTGGG 1 cut(s) 103
BpiI GAAGAC 3 cut(s) 632, 1627, 1668
BplI GAGNNNNNCTC 2 cut(s) 337, 369
Bpu14I TTCGAA 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 573
BsaBI GATNNNNATC 2 cut(s) 967, 1347
BsaHI GRCGYC 2 cut(s) 150, 1308
BsaJI CCNNGG 2 cut(s) 424, 1302
Bsc4I CCNNNNNNNGG 4 cut(s) 264, 553, 1198, 1503
Bse1I ACTGG 2 cut(s) 109, 1806
Bse3DI GCAATG 1 cut(s) 1033
Bse8I GATNNNNATC 2 cut(s) 967, 1347
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 424, 1302
BseGI GGATG 5 cut(s) 24, 252, 1138, 1237, 1512
BseJI GATNNNNATC 2 cut(s) 967, 1347
BseLI CCNNNNNNNGG 4 cut(s) 264, 553, 1198, 1503
BseMI GCAATG 1 cut(s) 1033
BseNI ACTGG 2 cut(s) 109, 1806
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 2 cut(s) 349, 1810
BseYI CCCAGC 2 cut(s) 49, 620
BshFI GGCC 2 cut(s) 746, 956
BslFI GGGAC 1 cut(s) 1226
BslI CCNNNNNNNGG 4 cut(s) 264, 553, 1198, 1503
BsmAI GTCTC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 1226
BsnI GGCC 2 cut(s) 746, 956
Bsp119I TTCGAA 1 cut(s) 864
Bsp1286I GDGCHC 2 cut(s) 49, 292
Bsp1407I TGTACA 2 cut(s) 374, 1063
Bsp143I GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
BspACI CCGC 1 cut(s) 1357
BspANI GGCC 2 cut(s) 746, 956
BspHI TCATGA 1 cut(s) 1591
BspPI GGATC 3 cut(s) 885, 1183, 1747
BspQI GCTCTTC 1 cut(s) 124
BspT104I TTCGAA 1 cut(s) 864
BsrDI GCAATG 1 cut(s) 1033
BsrGI TGTACA 2 cut(s) 374, 1063
BsrI ACTGG 2 cut(s) 109, 1806
BssECI CCNNGG 2 cut(s) 424, 1302
BssMI GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
BssNAI GTATAC 1 cut(s) 1008
BssNI GRCGYC 2 cut(s) 150, 1308
BssT1I CCWWGG 1 cut(s) 1302
Bst1107I GTATAC 1 cut(s) 1008
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 4 cut(s) 319, 1068, 1318, 1482
Bst6I CTCTTC 3 cut(s) 124, 1286, 1509
BstACI GRCGYC 2 cut(s) 150, 1308
BstAPI GCANNNNNTGC 1 cut(s) 1035
BstAUI TGTACA 2 cut(s) 374, 1063
BstBAI YACGTR 1 cut(s) 573
BstBI TTCGAA 1 cut(s) 864
BstC8I GCNNGC 3 cut(s) 744, 1214, 1522
BstDEI CTNAG 2 cut(s) 200, 1690
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 5 cut(s) 24, 252, 1138, 1237, 1512
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 7 cut(s) 771, 880, 1191, 1345, 1572, 1755, 1777
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
BstMWI GCNNNNNNNGC 6 cut(s) 502, 516, 1035, 1526, 1777, 1829
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 3 cut(s) 1390, 1585, 1823
BstSCI CCNGG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 349, 1810
BstV2I GAAGAC 3 cut(s) 632, 1627, 1668
BstX2I RGATCY 2 cut(s) 1342, 1569
BstYI RGATCY 2 cut(s) 1342, 1569
BstZ17I GTATAC 1 cut(s) 1008
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 2 cut(s) 746, 956
BtsCI GGATG 5 cut(s) 24, 252, 1138, 1237, 1512
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 5 cut(s) 116, 315, 540, 1314, 1784
Cac8I GCNNGC 3 cut(s) 744, 1214, 1522
CciI TCATGA 1 cut(s) 1591
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 4 cut(s) 421, 544, 955, 1299
CseI GACGC 2 cut(s) 158, 1316
Csp6I GTAC 4 cut(s) 348, 375, 785, 1064
CspCI CAANNNNNGTGG 2 cut(s) 142, 177
CviAII CATG 7 cut(s) 235, 458, 976, 1387, 1582, 1592, 1820
CviQI GTAC 4 cut(s) 348, 375, 785, 1064
DdeI CTNAG 2 cut(s) 200, 1690
DpnI GATC 7 cut(s) 770, 879, 1190, 1344, 1571, 1754, 1776
DpnII GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
DraI TTTAAA 1 cut(s) 1075
Eam1104I CTCTTC 3 cut(s) 124, 1286, 1509
EarI CTCTTC 3 cut(s) 124, 1286, 1509
Eco130I CCWWGG 1 cut(s) 1302
Eco147I AGGCCT 1 cut(s) 746
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 3 cut(s) 421, 544, 1299
Eco47III AGCGCT 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 549, 1621
Eco72I CACGTG 1 cut(s) 573
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 1302
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 1302
FaeI CATG 7 cut(s) 238, 461, 979, 1390, 1585, 1595, 1823
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FaqI GGGAC 1 cut(s) 1226
FatI CATG 7 cut(s) 234, 457, 975, 1386, 1581, 1591, 1819
FauNDI CATATG 1 cut(s) 1828
FbaI TGATCA 1 cut(s) 768
FblI GTMKAC 2 cut(s) 174, 1007
Fnu4HI GCNGC 2 cut(s) 338, 1824
FokI GGATG 5 cut(s) 31, 239, 1145, 1244, 1519
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 338, 1824
FspBI CTAG 1 cut(s) 440
GlaI GCGC 1 cut(s) 54
GluI GCNGC 2 cut(s) 338, 1824
GsaI CCCAGC 2 cut(s) 53, 624
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 746, 956
HgaI GACGC 2 cut(s) 158, 1316
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 2 cut(s) 150, 1308
Hin1II CATG 7 cut(s) 238, 461, 979, 1390, 1585, 1595, 1823
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 2 cut(s) 1210, 1728
HinfI GANTC 5 cut(s) 238, 412, 963, 1095, 1333
HphI GGTGA 4 cut(s) 848, 895, 987, 1421
Hpy166II GTNNAC 3 cut(s) 175, 421, 1008
Hpy188I TCNGA 3 cut(s) 104, 411, 691
Hpy188III TCNNGA 5 cut(s) 547, 643, 1352, 1592, 1667
Hpy8I GTNNAC 3 cut(s) 175, 421, 1008
HpyAV CCTTC 8 cut(s) 4, 666, 868, 916, 1222, 1290, 1496, 1624
HpyCH4III ACNGT 4 cut(s) 319, 1068, 1318, 1482
HpyCH4IV ACGT 1 cut(s) 572
HpyF10VI GCNNNNNNNGC 6 cut(s) 502, 516, 1035, 1526, 1777, 1829
HpyF3I CTNAG 2 cut(s) 200, 1690
HpySE526I ACGT 1 cut(s) 572
Hsp92I GRCGYC 2 cut(s) 150, 1308
Hsp92II CATG 7 cut(s) 238, 461, 979, 1390, 1585, 1595, 1823
HspAI GCGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 768
Kzo9I GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 2 cut(s) 349, 1810
LweI GCATC 7 cut(s) 781, 1123, 1267, 1368, 1458, 1477, 1758
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 4 cut(s) 221, 901, 1111, 1255
MalI GATC 7 cut(s) 770, 879, 1190, 1344, 1571, 1754, 1776
MboI GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 2 cut(s) 1342, 1569
MhlI GDGCHC 2 cut(s) 49, 292
MlyI GAGTC 1 cut(s) 1327
MmeI TCCRAC 3 cut(s) 385, 1110, 1521
MroXI GAANNNNTTC 2 cut(s) 1542, 1634
MslI CAYNNNNRTG 1 cut(s) 1402
MspA1I CMGCKG 2 cut(s) 340, 1371
MspR9I CCNGG 1 cut(s) 425
MunI CAATTG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 425
MwoI GCNNNNNNNGC 6 cut(s) 502, 516, 1035, 1526, 1777, 1829
NdeI CATATG 1 cut(s) 1828
NdeII GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
NlaIII CATG 7 cut(s) 238, 461, 979, 1390, 1585, 1595, 1823
NmuCI GTSAC 1 cut(s) 901
NspI RCATGY 3 cut(s) 1390, 1585, 1823
NspV TTCGAA 1 cut(s) 864
PagI TCATGA 1 cut(s) 1591
PceI AGGCCT 1 cut(s) 746
PciSI GCTCTTC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 1542, 1634
PfeI GAWTC 4 cut(s) 238, 412, 963, 1095
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 2 cut(s) 339, 1825
PleI GAGTC 1 cut(s) 1327
PmaCI CACGTG 1 cut(s) 573
PmlI CACGTG 1 cut(s) 573
PpsI GAGTC 1 cut(s) 1327
Ppu21I YACGTR 1 cut(s) 573
PshBI ATTAAT 3 cut(s) 393, 603, 812
PsiI TTATAA 2 cut(s) 186, 804
Psp6I CCWGG 1 cut(s) 423
PspCI CACGTG 1 cut(s) 573
PspFI CCCAGC 2 cut(s) 49, 620
PspGI CCWGG 1 cut(s) 423
PspPI GGNCC 4 cut(s) 421, 544, 955, 1299
PsuI RGATCY 2 cut(s) 1342, 1569
PvuII CAGCTG 2 cut(s) 340, 1371
RsaI GTAC 4 cut(s) 349, 376, 786, 1065
RsaNI GTAC 4 cut(s) 348, 375, 785, 1064
RseI CAYNNNNRTG 1 cut(s) 1402
SapI GCTCTTC 1 cut(s) 124
SatI GCNGC 2 cut(s) 338, 1824
Sau3AI GATC 7 cut(s) 768, 877, 1188, 1342, 1569, 1752, 1774
Sau96I GGNCC 4 cut(s) 421, 544, 955, 1299
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 1 cut(s) 1327
ScrFI CCNGG 1 cut(s) 425
SduI GDGCHC 2 cut(s) 49, 292
SfaNI GCATC 7 cut(s) 781, 1123, 1267, 1368, 1458, 1477, 1758
SfuI TTCGAA 1 cut(s) 864
SinI GGWCC 3 cut(s) 421, 544, 1299
SmiMI CAYNNNNRTG 1 cut(s) 1402
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
SseBI AGGCCT 1 cut(s) 746
SsiI CCGC 1 cut(s) 1357
SspI AATATT 1 cut(s) 1108
SspMI CTAG 1 cut(s) 440
StuI AGGCCT 1 cut(s) 746
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 1 cut(s) 1302
TaaI ACNGT 4 cut(s) 319, 1068, 1318, 1482
TaiI ACGT 1 cut(s) 575
TaqI TCGA 1 cut(s) 864
TatI WGTACW 3 cut(s) 347, 374, 1063
TfiI GAWTC 4 cut(s) 238, 412, 963, 1095
TscAI CASTG 5 cut(s) 116, 322, 540, 1321, 1791
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 2 cut(s) 337, 1823
Tsp45I GTSAC 1 cut(s) 901
TspGWI ACGGA 1 cut(s) 939
TspRI CASTG 5 cut(s) 116, 322, 540, 1321, 1791
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 3 cut(s) 421, 544, 1299
VspI ATTAAT 3 cut(s) 393, 603, 812
XagI CCTNNNNNAGG 1 cut(s) 262
XapI RAATTY 2 cut(s) 685, 990
XceI RCATGY 3 cut(s) 1390, 1585, 1823
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XmiI GTMKAC 2 cut(s) 174, 1007
XmnI GAANNNNTTC 2 cut(s) 1542, 1634
XspI CTAG 1 cut(s) 440
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.