Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

29670815 .. 29675113

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G346200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTGCCCCCCTAGATTCAGATACATATGGTACTTTGATTAATGGATTGTGCAAGTTAGGAAAGATTGGTGAAGCAAAGGAGCTCTTCAATGAGATGGAAACAAAAGGTTGTTTGCCCTCTGTTGTTACGTATACTTCCTTGATACACGGCTTTTGCCAAACCAACAATTTGGACGAAGCTGTGGGGTTGTTTGAACACATGAAAACCAAATGTCTTTACTTACAGCTCTTTGATGGATGGATGGAACTATTAGACTTAATGGTCAGTAAGCGCCATAAGCCAAACAGCATCACTTATAGTACTTTGCTTCACGGATTCTGTGAAGAAGGAATGCTTCAAGAAGCTTTGGAGATTCTAGATAGGATGAAGCTTCAAGGCATGAAACCAGATGCAGGGCTGTATGGGAAAGTAATAAGTAGCTTTTGCAATATTTGCAAGTTCCAGGAAGCTGCAAACTTTCTTGATGAGATGGTCCTCAGAGGAGCTAACCTAACAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

168

Amino Acids

18.66

Weight (kDa)

5.08

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	34, 304
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	4 cut(s)	91, 197, 341, 377
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	8 cut(s)	85, 182, 229, 347, 373, 423, 452, 488
AluI	AGCT	8 cut(s)	85, 182, 229, 347, 373, 423, 452, 488
Alw21I	GWGCWC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	452
AseI	ATTAAT	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	5 cut(s)	91, 230, 234, 238, 466
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	446
BfaI	CTAG	2 cut(s)	14, 359
BfoI	RGCGCY	1 cut(s)	277
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	300, 382
BsaAI	YACGTR	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	446
BseGI	GGATG	3 cut(s)	245, 249, 372
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	498
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	10, 87
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	7
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	5
BssNAI	GTATAC	1 cut(s)	135
Bst1107I	GTATAC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstBAI	YACGTR	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	245, 249, 372
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 435
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	10
BstSNI	TACGTA	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	245, 249, 372
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	33, 303
CviAII	CATG	2 cut(s)	202, 382
CviQI	GTAC	2 cut(s)	33, 303
DdeI	CTNAG	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	2 cut(s)	205, 385
FaiI	YATR	8 cut(s)	28, 30, 135, 203, 279, 300, 383, 405
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 321, 353
FatI	CATG	2 cut(s)	201, 381
FauNDI	CATATG	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	3 cut(s)	252, 256, 379
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	14, 359
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	277
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	205, 385
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HindIII	AAGCTT	2 cut(s)	345, 371
HinfI	GANTC	3 cut(s)	17, 318, 355
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	2 cut(s)	22, 482
Hpy188III	TCNNGA	3 cut(s)	341, 359, 464
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	54, 395, 429, 438, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 435
HpyF3I	CTNAG	1 cut(s)	479
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	205, 385
HspAI	GCGC	1 cut(s)	274
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	82, 485
LpnPI	CCDG	4 cut(s)	381, 402, 431, 458
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	2 cut(s)	300, 382
MaeI	CTAG	2 cut(s)	14, 359
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	79, 338
MhlI	GDGCHC	2 cut(s)	10, 87
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	3 cut(s)	130, 476, 488
MseI	TTAA	2 cut(s)	42, 260
MspR9I	CCNGG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	280, 435
NdeI	CATATG	1 cut(s)	28
NlaIII	CATG	2 cut(s)	205, 385
NlaIV	GGNNCC	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	17, 318, 355
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	132
PshBI	ATTAAT	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	475
RsaI	GTAC	2 cut(s)	34, 304
RsaNI	GTAC	2 cut(s)	33, 303
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	42, 260
SatI	GCNGC	1 cut(s)	453
Sau96I	GGNCC	1 cut(s)	475
ScaI	AGTACT	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	2 cut(s)	10, 87
SfaNI	GCATC	2 cut(s)	300, 382
SinI	GGWCC	1 cut(s)	475
SnaBI	TACGTA	1 cut(s)	132
Sse9I	AATT	1 cut(s)	169
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	14, 359
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	444
TaiI	ACGT	1 cut(s)	134
TasI	AATT	1 cut(s)	169
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	3 cut(s)	17, 318, 355
Tru1I	TTAA	2 cut(s)	42, 260
Tru9I	TTAA	2 cut(s)	42, 260
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	218, 383, 398
TspGWI	ACGGA	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	2 cut(s)	14, 359
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.