Rmu_co8044332.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8044332.1
OG0001472
Physical Location & Seq
Forward (+)
1 .. 352
352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8044332.1_g000001.1.cds

Sequence Viewer

Length: 216 bp
gtaagatttggagattgtgaagagaaagagttggagtatgaaactgttgaggtcaactttcaggatttggaaggcgaaaagcttgcgatcaaagaagagattaggacattgaagacaggagttatattaatggctgcccgtgcccacacgatgctgcgggttgttttcagtttctttcattccactaaattgtatggaaattattctatgcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.29

Weight (kDa)

5.3

Isoelectric Point (pI)

15.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 134, 154
AseI ATTAAT 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 121, 141
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BisI GCNGC 2 cut(s) 135, 155
BlsI GCNGC 2 cut(s) 136, 156
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 2 cut(s) 121, 141
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 157
BssMI GATC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 15, 90
BstC8I GCNNGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 121, 141
BstV2I GAAGAC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 84
CviJI RGCY 2 cut(s) 82, 134
CviKI_1 RGCY 2 cut(s) 82, 134
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 15, 90
EarI CTCTTC 2 cut(s) 15, 90
FaiI YATR 4 cut(s) 39, 125, 195, 209
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 135, 155
Fsp4HI GCNGC 2 cut(s) 135, 155
GluI GCNGC 2 cut(s) 135, 155
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 2 cut(s) 47, 102
Lsp1109I GCAGC 2 cut(s) 121, 141
LweI GCATC 1 cut(s) 141
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 3 cut(s) 32, 107, 124
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 188, 199
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 136, 156
PshBI ATTAAT 1 cut(s) 128
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 135, 155
Sau3AI GATC 1 cut(s) 87
SduI GDGCHC 1 cut(s) 145
SetI ASST 2 cut(s) 54, 84
SfaNI GCATC 1 cut(s) 141
SgeI CNNG 7 cut(s) 74, 95, 129, 150, 152, 160, 170
Sse9I AATT 2 cut(s) 188, 199
SsiI CCGC 1 cut(s) 157
TaaI ACNGT 1 cut(s) 46
TasI AATT 2 cut(s) 188, 199
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 2 cut(s) 134, 154
TspDTI ATGAA 2 cut(s) 54, 167
VspI ATTAAT 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.