Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

1034013 .. 1035320

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGAGGATAACCACAAGACCTCCATCTCCAGGTAATCTTCCTTCCTTCCGTTTTACATTTCTGCAGAATACAAGTGGTGGATTTCATTCCGACGCTGTTCATGCTAATCCTACTTGTACGGATGGAATTAAACAATCCCATTTGGAGTCGGAGAGTATGATTCAAACTCGATGCAAATCTGGAAAAATTAGGAAAGATGAAGCATTAGGTTACTTAAATTCCATGATTCAAACAAGACACTTGCCCTCTATTTGGACTTTCAATTGTTTGCTTGGGGCACTCTCCAAGATGAAACAATATTCTACTGTCGTTTCTACGTGCAAACAGTTGATGGGTTGCGCTCAGTTCCAACCTGATGTCAGTACAATGGCTATTTTTGCAAATTGCTTGTGCCGTCTGAATTGGGGGGACGCGTGTTTCTCTGTTCTAGCAATTACCGTTAAATATGGTCTTCAACCCGATGCTCATTTTATGGCTAGTTTGCTTCACGGGCTCTGTAAGAATAGTTCCCTGGCAGAGGCAATGGCGTTCTTCCAAGAAATAGAAACAAAAGGATACGCATGCGACGAGAGCACTTATGGTACCAAGACGTGGGAAGAAGGAAGGTTTAAGCCAAACCAAGCATGCTACAATCCAATCATCGCTAGCCTTTGTAAAGAAAACCGAATAAATGAGGCCTTGACTCTATTTCGAGATATGATCAGCAAAACTGTTGTACCGGACATTATCAGTTATACCACTTTGATTCATGGGTTATGCAGCATGAATCGCTGGGAAGAAGTGCTCTCTCTTTTTGAAGGAATGGTAGATCAAGGAGTCAAGCCTAATGTTGTCACCTACAACACTCTAATTTATGCATTGTGCCAATCGGGGAGGATGGAAAAGGCCAAGAGCTACTTGATTTGCATGCTTAACAGTGGAATTTCACCAGATGTATACACGTATAATGTTGTTATCAGCAGTCTTTGCAAGGAAGAAAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

330

Amino Acids

36.79

Weight (kDa)

8.27

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	584
AccB7I	CCANNNNNTGG	1 cut(s)	594
AccI	GTMKAC	1 cut(s)	939
AccII	CGCG	1 cut(s)	416
AcsI	RAATTY	3 cut(s)	220, 924, 984
AfaI	GTAC	4 cut(s)	121, 367, 586, 720
AfiI	CCNNNNNNNGG	4 cut(s)	32, 255, 520, 594
AflIII	ACRYGT	2 cut(s)	414, 942
AgsI	TTSAA	5 cut(s)	167, 233, 265, 458, 800
AjiI	CACGTC	1 cut(s)	594
AjnI	CCWGG	2 cut(s)	31, 513
AluBI	AGCT	1 cut(s)	897
AluI	AGCT	1 cut(s)	897
Alw21I	GWGCWC	2 cut(s)	578, 789
AoxI	GGCC	2 cut(s)	678, 888
ApeKI	GCWGC	1 cut(s)	762
ApoI	RAATTY	3 cut(s)	220, 924, 984
Asp718I	GGTACC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	829, 921
AsuNHI	GCTAGC	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BanI	GGYRCC	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	498
BarI	GAAGNNNNNNTAC	2 cut(s)	28, 60
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	578, 789
BbvI	GCAGC	1 cut(s)	774
BccI	CCATC	4 cut(s)	34, 119, 328, 874
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	2 cut(s)	33, 515
BciVI	GTATCC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	702
BfaI	CTAG	3 cut(s)	431, 480, 648
BfmI	CTRYAG	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	1 cut(s)	763
BlsI	GCNGC	1 cut(s)	764
Bme1390I	CCNGG	2 cut(s)	33, 515
BmgBI	CACGTC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	2 cut(s)	33, 515
BmsI	GCATC	2 cut(s)	164, 454
BmtI	GCTAGC	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	15
BsaAI	YACGTR	2 cut(s)	321, 945
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 255, 520, 594
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	33, 515
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	130, 885
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	4 cut(s)	32, 255, 520, 594
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	774
BseYI	CCCAGC	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	680, 890
BshNI	GGYRCC	1 cut(s)	584
BsiHKAI	GWGCWC	2 cut(s)	578, 789
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	32, 255, 520, 594
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	2 cut(s)	680, 890
Bsp1286I	GDGCHC	4 cut(s)	283, 498, 578, 789
Bsp143I	GATC	2 cut(s)	702, 811
BspANI	GGCC	2 cut(s)	680, 890
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	586
BspMAI	CTGCAG	1 cut(s)	69
BspOI	GCTAGC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	2 cut(s)	702, 811
BssNAI	GTATAC	1 cut(s)	940
Bst1107I	GTATAC	1 cut(s)	940
Bst2UI	CCWGG	2 cut(s)	33, 515
Bst4CI	ACNGT	5 cut(s)	310, 330, 442, 715, 920
BstAPI	GCANNNNNTGC	1 cut(s)	969
BstBAI	YACGTR	2 cut(s)	321, 945
BstC8I	GCNNGC	4 cut(s)	565, 628, 649, 911
BstDEI	CTNAG	1 cut(s)	345
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	2 cut(s)	130, 885
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	2 cut(s)	705, 814
BstMBI	GATC	2 cut(s)	702, 811
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 380, 493, 573, 771, 969
BstNI	CCWGG	2 cut(s)	33, 515
BstNSI	RCATGY	3 cut(s)	567, 630, 913
BstSCI	CCNGG	2 cut(s)	31, 513
BstSFI	CTRYAG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	774
BstV2I	GAAGAC	1 cut(s)	446
BstZ17I	GTATAC	1 cut(s)	940
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	680, 890
BtgZI	GCGATG	1 cut(s)	628
BtrI	CACGTC	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	130, 885
BtsIMutI	CAGTG	1 cut(s)	925
Cac8I	GCNNGC	4 cut(s)	565, 628, 649, 911
CfoI	GCGC	1 cut(s)	344
CseI	GACGC	2 cut(s)	104, 422
Csp6I	GTAC	4 cut(s)	120, 366, 585, 719
CviAII	CATG	7 cut(s)	104, 226, 564, 627, 752, 766, 910
CviJI	RGCY	9 cut(s)	374, 479, 496, 616, 651, 680, 826, 890, 897
CviKI_1	RGCY	9 cut(s)	374, 479, 496, 616, 651, 680, 826, 890, 897
CviQI	GTAC	4 cut(s)	120, 366, 585, 719
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	704, 813
DpnII	GATC	2 cut(s)	702, 811
Eco147I	AGGCCT	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	31, 513
EcoT22I	ATGCAT	1 cut(s)	862
EcoT38I	GRGCYC	1 cut(s)	498
FaeI	CATG	7 cut(s)	107, 229, 567, 630, 755, 769, 913
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	7 cut(s)	103, 225, 563, 626, 751, 765, 909
FbaI	TGATCA	1 cut(s)	702
FblI	GTMKAC	1 cut(s)	939
Fnu4HI	GCNGC	1 cut(s)	763
FokI	GGATG	2 cut(s)	137, 892
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	1 cut(s)	763
FspBI	CTAG	3 cut(s)	431, 480, 648
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	763
GsaI	CCCAGC	1 cut(s)	778
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	680, 890
HapII	CCGG	1 cut(s)	722
HgaI	GACGC	2 cut(s)	104, 422
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	7 cut(s)	107, 229, 567, 630, 755, 769, 913
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HinfI	GANTC	7 cut(s)	149, 163, 229, 685, 748, 769, 819
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	2 cut(s)	829, 921
Hpy166II	GTNNAC	1 cut(s)	940
Hpy188I	TCNGA	3 cut(s)	94, 154, 402
Hpy188III	TCNNGA	2 cut(s)	183, 695
Hpy8I	GTNNAC	1 cut(s)	940
Hpy99I	CGWCG	2 cut(s)	98, 572
HpyAV	CCTTC	5 cut(s)	54, 58, 596, 600, 794
HpyCH4III	ACNGT	5 cut(s)	310, 330, 442, 715, 920
HpyCH4IV	ACGT	3 cut(s)	320, 593, 944
HpyCH4V	TGCA	8 cut(s)	67, 177, 324, 383, 762, 860, 909, 972
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 380, 493, 573, 771, 969
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	3 cut(s)	320, 593, 944
Hsp92II	CATG	7 cut(s)	107, 229, 567, 630, 755, 769, 913
HspAI	GCGC	1 cut(s)	342
KpnI	GGTACC	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	702
Kzo9I	GATC	2 cut(s)	702, 811
LpnPI	CCDG	9 cut(s)	18, 45, 168, 369, 500, 527, 735, 760, 945
Lsp1109I	GCAGC	1 cut(s)	774
LweI	GCATC	2 cut(s)	164, 454
MaeI	CTAG	3 cut(s)	431, 480, 648
MaeII	ACGT	3 cut(s)	320, 593, 944
MaeIII	GTNAC	2 cut(s)	212, 835
MalI	GATC	2 cut(s)	704, 813
MboI	GATC	2 cut(s)	702, 811
MboII	GAAGA	7 cut(s)	16, 32, 446, 526, 611, 791, 989
MfeI	CAATTG	1 cut(s)	265
MhlI	GDGCHC	4 cut(s)	283, 498, 578, 789
MluI	ACGCGT	1 cut(s)	414
MlyI	GAGTC	3 cut(s)	158, 679, 828
MmeI	TCCRAC	3 cut(s)	117, 132, 376
MnlI	CCTC	5 cut(s)	33, 259, 514, 670, 870
Mph1103I	ATGCAT	1 cut(s)	862
MseI	TTAA	6 cut(s)	132, 218, 444, 612, 915, 988
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	33, 515
MunI	CAATTG	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	33, 515
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	6 cut(s)	104, 380, 493, 573, 771, 969
NdeII	GATC	2 cut(s)	702, 811
NheI	GCTAGC	1 cut(s)	647
NlaIII	CATG	7 cut(s)	107, 229, 567, 630, 755, 769, 913
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	835
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	3 cut(s)	567, 630, 913
PaeI	GCATGC	3 cut(s)	567, 630, 913
PceI	AGGCCT	1 cut(s)	680
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PfeI	GAWTC	4 cut(s)	163, 229, 748, 769
PflMI	CCANNNNNTGG	1 cut(s)	594
PkrI	GCNGC	1 cut(s)	764
PleI	GAGTC	3 cut(s)	157, 679, 827
PpsI	GAGTC	3 cut(s)	157, 679, 827
Ppu21I	YACGTR	2 cut(s)	321, 945
Psp6I	CCWGG	2 cut(s)	31, 513
PspFI	CCCAGC	1 cut(s)	774
PspGI	CCWGG	2 cut(s)	31, 513
PspN4I	GGNNCC	1 cut(s)	586
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
PstI	CTGCAG	1 cut(s)	69
RsaI	GTAC	4 cut(s)	121, 367, 586, 720
RsaNI	GTAC	4 cut(s)	120, 366, 585, 719
SaqAI	TTAA	6 cut(s)	132, 218, 444, 612, 915, 988
SatI	GCNGC	1 cut(s)	763
Sau3AI	GATC	2 cut(s)	702, 811
SchI	GAGTC	3 cut(s)	158, 679, 828
ScrFI	CCNGG	2 cut(s)	33, 515
SduI	GDGCHC	4 cut(s)	283, 498, 578, 789
SfaNI	GCATC	2 cut(s)	164, 454
SfcI	CTRYAG	1 cut(s)	65
SphI	GCATGC	3 cut(s)	567, 630, 913
SseBI	AGGCCT	1 cut(s)	680
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	3 cut(s)	431, 480, 648
StuI	AGGCCT	1 cut(s)	680
StyD4I	CCNGG	2 cut(s)	31, 513
TaaI	ACNGT	5 cut(s)	310, 330, 442, 715, 920
TaiI	ACGT	3 cut(s)	323, 596, 947
TaqI	TCGA	2 cut(s)	172, 694
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	4 cut(s)	163, 229, 748, 769
Tru1I	TTAA	6 cut(s)	132, 218, 444, 612, 915, 988
Tru9I	TTAA	6 cut(s)	132, 218, 444, 612, 915, 988
TscAI	CASTG	1 cut(s)	925
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	1 cut(s)	762
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	7 cut(s)	17, 77, 92, 216, 308, 740, 782
TspGWI	ACGGA	2 cut(s)	41, 137
TspRI	CASTG	1 cut(s)	925
Van91I	CCANNNNNTGG	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	3 cut(s)	220, 924, 984
XceI	RCATGY	3 cut(s)	567, 630, 913
XmiI	GTMKAC	1 cut(s)	939
XspI	CTAG	3 cut(s)	431, 480, 648
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.