Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Forward (+)

9529339 .. 9530267

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1069200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTTCCTTGCCCTCAATCTTGTGTTGTTTTCTTCAACAATTACTTGGCTTTCTTTCACTCTCAATCTTCAAACCCTAAACCCAATGAATCTACAAATACCCATCCCAAGAAGCAGCGGCTTGTCAGGGAGAGGAATCCACCCACCAAGATTGGTAATCTCGAGGACGCTTTGAGTTTGTTCAATGTGAGGCTTCGACTGCGCTCTCTGCCTTCTGTTGTCTGTTTCACCCAAATTTTGGGTCAACTTGGGAAGGTGAAACGTTACTCGGCCGTGATTTCTTTGTATAACCAAATGGGTTTGTTGGGATTGTTCCTGATGTTTATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

111

Amino Acids

12.58

Weight (kDa)

10.12

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	238
AciI	CCGC	1 cut(s)	118
AclI	AACGTT	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	37, 72, 184
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	234
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	220, 268
AvaI	CYCGRG	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	331
BisI	GCNGC	2 cut(s)	116, 119
BlsI	GCNGC	2 cut(s)	117, 120
BmeT110I	CYCGRG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	238
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	161
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 208
BstV1I	GCAGC	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	103
CfoI	GCGC	1 cut(s)	204
CseI	GACGC	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviJI	RGCY	4 cut(s)	50, 121, 193, 272
CviKI_1	RGCY	4 cut(s)	50, 121, 193, 272
EaeI	YGGCCR	1 cut(s)	270
EagI	CGGCCG	1 cut(s)	270
EclXI	CGGCCG	1 cut(s)	270
Eco52I	CGGCCG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	161
FaiI	YATR	2 cut(s)	288, 326
Fnu4HI	GCNGC	2 cut(s)	116, 119
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	116, 119
FspBI	CTAG	1 cut(s)	331
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	2 cut(s)	116, 119
HaeIII	GGCC	1 cut(s)	272
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	89, 136
HphI	GGTGA	2 cut(s)	220, 268
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	161, 316
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	222, 247
HpyCH4IV	ACGT	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 208
HpySE526I	ACGT	1 cut(s)	262
HspAI	GCGC	1 cut(s)	202
LpnPI	CCDG	2 cut(s)	112, 329
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	331
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	2 cut(s)	25, 60
MluCI	AATT	2 cut(s)	40, 234
MnlI	CCTC	4 cut(s)	24, 126, 157, 183
MspA1I	CMGCKG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	199, 208
NmeAIII	GCCGAG	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	89, 136
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	117, 120
Psp1406I	AACGTT	1 cut(s)	262
SatI	GCNGC	2 cut(s)	116, 119
SetI	ASST	2 cut(s)	258, 265
Sfr274I	CTCGAG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	40, 234
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	331
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	162, 196
TasI	AATT	2 cut(s)	40, 234
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	89, 136
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	238
XapI	RAATTY	1 cut(s)	234
XhoI	CTCGAG	1 cut(s)	161
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.