Rorug04G0125900

endonuclease activity

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
19969146 .. 19969415
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0125900.1

Sequence Viewer

Length: 159 bp
ATGTTGAGAATATATACATCCCACATGGGAAAAATGGGACTTTGCCTATGGGTTTATAAGGGTTTGAGCCACTCCATCCATTGCCAATTGGTTTTGGATGTGAACCCCAAATTACTTTATCATGGTATCAGAGCGGGTTACCCACGTGTGCATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

6.01

Weight (kDa)

9.7

Isoelectric Point (pI)

16.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 1 cut(s) 134
AcvI CACGTG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 146
BccI CCATC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 79
BseGI GGATG 3 cut(s) 17, 75, 103
BseMI GCAATG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 51
BspACI CCGC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 146
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 3 cut(s) 17, 75, 103
BstNSI RCATGY 1 cut(s) 155
BstPI GGTNACC 1 cut(s) 137
BtsCI GGATG 3 cut(s) 17, 75, 103
CviAII CATG 3 cut(s) 25, 122, 152
CviJI RGCY 1 cut(s) 69
CviKI_1 RGCY 1 cut(s) 69
Eco72I CACGTG 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
FaeI CATG 3 cut(s) 28, 125, 155
FaiI YATR 7 cut(s) 13, 15, 26, 49, 57, 123, 153
FaqI GGGAC 1 cut(s) 51
FatI CATG 3 cut(s) 24, 121, 151
FauI CCCGC 1 cut(s) 127
FokI GGATG 3 cut(s) 4, 62, 110
Hin1II CATG 3 cut(s) 28, 125, 155
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 3 cut(s) 28, 125, 155
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 137
MbiI CCGCTC 1 cut(s) 134
MfeI CAATTG 1 cut(s) 86
MluCI AATT 2 cut(s) 86, 110
MunI CAATTG 1 cut(s) 86
NlaIII CATG 3 cut(s) 28, 125, 155
NspI RCATGY 1 cut(s) 155
PmaCI CACGTG 1 cut(s) 146
PmlI CACGTG 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 146
PsiI TTATAA 1 cut(s) 57
PspCI CACGTG 1 cut(s) 146
PspEI GGTNACC 1 cut(s) 137
SetI ASST 1 cut(s) 148
SgeI CNNG 3 cut(s) 37, 134, 147
Sse9I AATT 2 cut(s) 86, 110
SsiI CCGC 1 cut(s) 134
TaiI ACGT 1 cut(s) 148
TasI AATT 2 cut(s) 86, 110
XceI RCATGY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.