Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029476.1

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Forward (+)

20 .. 1117

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029476.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgcgggttaggaaagttatcccagattttataacttatactgctattattcatggattctgcagaacagggaagatgatggaagcagataagctcttccatgaaatggttagtaaagggttggaaacagatgaagttacttatacagcactgattgatggttattgcaaagcaggtcagatgaaagaggctttttctcttcacaaccagatggttagtatggggcttagcccaaatgttgtcacttatactgcactggctgatggtctttgtaaacgaggggaagtagatgtagcaaacgaacttcttcatgaggtgtgtaggaaaggccttcaacttaatgtctgcacttacaactcgatcgttaatggtctttgtaaaacaggaaatatagggcaagcagaagaattgatggaacaaatggaggttgcagggccccatcctgatactattacttatactactctcatggatgcatactgtaagacaggggagatggctaaggctcacaaggtcctgcgtgagatgctggataaaggacttcaacctacagttgttacatttaatgtactgatgaatggcttttgtatgtcaggaatgctagaagatggtgagaggttacttaaatggatgttggagaagaatattgtgcctaatgccaccacctacaattctttaatgaagcagtactgcatcagaaataacatgcgagctacaactgagatgttcaaaggcatgtctgctagtggagtgatgcccgatagcaacacgtataacattttaataaaagggcattgtaaagcacggaatatgaaggaggcatggtttttgcacaaagaaatggcagggaaaggatttattcttacaactagttcttacattgcacttataaatggtttttttaagaggaagaagtttgtggaggcaagggaactctttgaagagatgagaagacaaggtttggtagcaaatagagaaatatacaacttctttgttgatatgaactatgaagaagggaacatggacattactcttgatctttgtgacgaagttatagagaattgtcttgttggcaagtccaaaaatgaagacacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0012505 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

365

Amino Acids

41.33

Weight (kDa)

6.12

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	32, 890
Acc36I	ACCTGC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	106
AciI	CCGC	1 cut(s)	4
AfaI	GTAC	2 cut(s)	570, 689
AfiI	CCNNNNNNNGG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	768
AgsI	TTSAA	4 cut(s)	335, 545, 730, 941
AhlI	ACTAGT	1 cut(s)	869
AluBI	AGCT	2 cut(s)	94, 713
AluI	AGCT	2 cut(s)	94, 713
AoxI	GGCC	2 cut(s)	328, 434
ApaI	GGGCCC	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	3 cut(s)	434, 435, 514
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	514
BaeGI	GKGCMC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	958
BccI	CCATC	8 cut(s)	73, 152, 205, 257, 406, 447, 490, 602
BcuI	ACTAGT	1 cut(s)	869
BfaI	CTAG	3 cut(s)	602, 744, 870
BfmI	CTRYAG	2 cut(s)	61, 549
BfuAI	ACCTGC	1 cut(s)	164
BlpI	GCTNAGC	1 cut(s)	227
BmcAI	AGTACT	1 cut(s)	689
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	3 cut(s)	434, 435, 514
BmiI	GGNNCC	2 cut(s)	436, 437
BmsI	GCATC	4 cut(s)	463, 516, 702, 744
BpiI	GAAGAC	1 cut(s)	958
Bpu10I	CCTNAGC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	879
BseGI	GGATG	3 cut(s)	439, 478, 636
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	261
BseSI	GKGCMC	1 cut(s)	438
BsgI	GTGCAG	2 cut(s)	237, 331
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	330, 436
BsiEI	CGRYCG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	330, 436
Bsp120I	GGGCCC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	360, 1036
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	330, 436
BspCNI	CTCAG	1 cut(s)	712
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	436, 437
BspMAI	CTGCAG	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	360, 1036
Bst4CI	ACNGT	2 cut(s)	482, 553
Bst6I	CTCTTC	3 cut(s)	101, 204, 936
BstBAI	YACGTR	1 cut(s)	771
BstC8I	GCNNGC	2 cut(s)	399, 711
BstDEI	CTNAG	3 cut(s)	227, 501, 720
BstF5I	GGATG	3 cut(s)	439, 478, 636
BstKTI	GATC	2 cut(s)	363, 1039
BstMBI	GATC	2 cut(s)	360, 1036
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNSI	RCATGY	2 cut(s)	709, 739
BstSFI	CTRYAG	2 cut(s)	61, 549
BstSLI	GKGCMC	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	958
BsuRI	GGCC	2 cut(s)	330, 436
BtsCI	GGATG	3 cut(s)	439, 478, 636
BtsIMutI	CAGTG	2 cut(s)	149, 254
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	399, 711
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	3 cut(s)	434, 435, 514
Csp6I	GTAC	2 cut(s)	569, 688
CviAII	CATG	8 cut(s)	53, 101, 311, 469, 706, 736, 822, 1021
CviQI	GTAC	2 cut(s)	569, 688
DdeI	CTNAG	3 cut(s)	227, 501, 720
DpnI	GATC	2 cut(s)	362, 1038
DpnII	GATC	2 cut(s)	360, 1036
Eam1104I	CTCTTC	3 cut(s)	101, 204, 936
EarI	CTCTTC	3 cut(s)	101, 204, 936
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	514
EcoO109I	RGGNCCY	3 cut(s)	434, 435, 514
EcoT22I	ATGCAT	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	8 cut(s)	56, 104, 314, 472, 709, 739, 825, 1024
FatI	CATG	8 cut(s)	52, 100, 310, 468, 705, 735, 821, 1020
FokI	GGATG	3 cut(s)	426, 485, 643
FriOI	GRGCYC	1 cut(s)	438
FspBI	CTAG	3 cut(s)	602, 744, 870
HaeIII	GGCC	2 cut(s)	330, 436
Hin1II	CATG	8 cut(s)	56, 104, 314, 472, 709, 739, 825, 1024
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	180, 698
Hpy188III	TCNNGA	4 cut(s)	311, 443, 594, 1034
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	341, 808, 1007
HpyCH4III	ACNGT	2 cut(s)	482, 553
HpyCH4IV	ACGT	1 cut(s)	770
HpyCH4V	TGCA	9 cut(s)	63, 168, 254, 348, 431, 476, 693, 832, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	3 cut(s)	227, 501, 720
HpySE526I	ACGT	1 cut(s)	770
Hsp92II	CATG	8 cut(s)	56, 104, 314, 472, 709, 739, 825, 1024
Kzo9I	GATC	2 cut(s)	360, 1036
LguI	GCTCTTC	1 cut(s)	101
LweI	GCATC	4 cut(s)	463, 516, 702, 744
MaeI	CTAG	3 cut(s)	602, 744, 870
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	5 cut(s)	136, 241, 556, 618, 1043
MalI	GATC	2 cut(s)	362, 1038
MboI	GATC	2 cut(s)	360, 1036
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	3 cut(s)	407, 670, 1060
MmeI	TCCRAC	2 cut(s)	102, 615
MnlI	CCTC	8 cut(s)	181, 272, 307, 418, 609, 811, 900, 916
Mph1103I	ATGCAT	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	7 cut(s)	339, 366, 564, 624, 677, 782, 903
Mva1269I	GAATGC	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	526
NdeII	GATC	2 cut(s)	360, 1036
NlaIII	CATG	8 cut(s)	56, 104, 314, 472, 709, 739, 825, 1024
NlaIV	GGNNCC	2 cut(s)	436, 437
NmuCI	GTSAC	2 cut(s)	241, 1043
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	2 cut(s)	709, 739
PagI	TCATGA	1 cut(s)	310
PceI	AGGCCT	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	106
Ple19I	CGATCG	1 cut(s)	363
Ppu21I	YACGTR	1 cut(s)	771
PpuMI	RGGWCCY	1 cut(s)	514
PsiI	TTATAA	2 cut(s)	32, 890
Psp5II	RGGWCCY	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	436, 437
PspOMI	GGGCCC	1 cut(s)	434
PspPI	GGNCC	3 cut(s)	434, 435, 514
PspPPI	RGGWCCY	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	65
PvuI	CGATCG	1 cut(s)	363
RsaI	GTAC	2 cut(s)	570, 689
RsaNI	GTAC	2 cut(s)	569, 688
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	7 cut(s)	339, 366, 564, 624, 677, 782, 903
Sau3AI	GATC	2 cut(s)	360, 1036
Sau96I	GGNCC	3 cut(s)	434, 435, 514
ScaI	AGTACT	1 cut(s)	689
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	4 cut(s)	463, 516, 702, 744
SfcI	CTRYAG	2 cut(s)	61, 549
SinI	GGWCC	1 cut(s)	514
SpeI	ACTAGT	1 cut(s)	869
Sse9I	AATT	3 cut(s)	407, 670, 1060
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	3 cut(s)	602, 744, 870
StuI	AGGCCT	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	482, 553
TaiI	ACGT	1 cut(s)	773
TaqI	TCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	407, 670, 1060
TatI	WGTACW	2 cut(s)	568, 687
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	7 cut(s)	339, 366, 564, 624, 677, 782, 903
Tru9I	TTAA	7 cut(s)	339, 366, 564, 624, 677, 782, 903
TscAI	CASTG	2 cut(s)	156, 261
TseFI	GTSAC	2 cut(s)	241, 1043
Tsp45I	GTSAC	2 cut(s)	241, 1043
TspGWI	ACGGA	1 cut(s)	820
TspRI	CASTG	2 cut(s)	156, 261
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	514
XceI	RCATGY	2 cut(s)	709, 739
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	3 cut(s)	602, 744, 870
ZrmI	AGTACT	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.