Rmu_sc0003264.1_g000004

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003264.1
OG0001472
Physical Location & Seq
Forward (+)
13342 .. 13999
658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003264.1_g000004.1.cds

Sequence Viewer

Length: 531 bp
atgaaggcactgggttacttcagttccatggttcaaatgaaacccatttgctccttcaattgtttgtttggggcaccatccaagatgaagcaatattccactgttttttctatgtgcaagcagatgatgagtaatgctttggaaggcacggcagaaaaacgttgtgaatctggcgctgttggattagatgaagccgtagattacttcaattccatggttaaaatgaaacccattccctcccctaaggcttttatggccgacttgggtctctctgctttagcaatttcccttaaacatggttttcaacctcaggcttattctctgaatcttttggttcgtgggctttgcaagagcagctctctggctgcagcagtggatttgttctggaaaatggaacaccgcgaatgcgaatgggatgaattcacttatggtatcataattaatgagttattcaaagctgggaagagtactgatgggatgaagatacttgagcacatatgtatggaaatggaaggtataagcccggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

176

Amino Acids

19.53

Weight (kDa)

6.3

Isoelectric Point (pI)

33.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 1 cut(s) 402
AciI CCGC 1 cut(s) 400
AclI AACGTT 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 4
AfaI GTAC 1 cut(s) 469
AgsI TTSAA 5 cut(s) 35, 58, 208, 305, 454
AluBI AGCT 2 cut(s) 357, 458
AluI AGCT 2 cut(s) 357, 458
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 354, 365, 368
ApoI RAATTY 1 cut(s) 419
AseI ATTAAT 1 cut(s) 441
AspLEI GCGC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 524
AxyI CCTNAGG 2 cut(s) 243, 309
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 495
BbvI GCAGC 3 cut(s) 352, 366, 380
BccI CCATC 2 cut(s) 85, 467
BceAI ACGGC 2 cut(s) 165, 179
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 529
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 3 cut(s) 355, 366, 369
BlsI GCNGC 3 cut(s) 356, 367, 370
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 524
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 524
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 27, 213
Bse1I ACTGG 1 cut(s) 15
Bse21I CCTNAGG 2 cut(s) 243, 309
BseDI CCNNGG 2 cut(s) 27, 213
BseGI GGATG 3 cut(s) 77, 421, 483
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 3 cut(s) 352, 366, 380
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 402
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 76, 495
Bsp19I CCATGG 2 cut(s) 27, 213
BspACI CCGC 1 cut(s) 400
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 27, 213
BssT1I CCWWGG 2 cut(s) 27, 213
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 243, 309
BstDSI CCRYGG 2 cut(s) 27, 213
BstF5I GGATG 3 cut(s) 77, 421, 483
BstFNI CGCG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 254, 354
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 3 cut(s) 352, 366, 380
Bsu36I CCTNAGG 2 cut(s) 243, 309
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 2 cut(s) 27, 213
BtsCI GGATG 3 cut(s) 77, 421, 483
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 3 cut(s) 8, 99, 378
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 468
CviAII CATG 3 cut(s) 28, 214, 296
CviJI RGCY 9 cut(s) 194, 248, 257, 314, 343, 357, 365, 458, 522
CviKI_1 RGCY 9 cut(s) 194, 248, 257, 314, 343, 357, 365, 458, 522
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 243, 309
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 2 cut(s) 27, 213
Eco31I GGTCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 4
Eco81I CCTNAGG 2 cut(s) 243, 309
EcoRI GAATTC 1 cut(s) 419
EcoT14I CCWWGG 2 cut(s) 27, 213
ErhI CCWWGG 2 cut(s) 27, 213
FaeI CATG 3 cut(s) 31, 217, 299
FatI CATG 3 cut(s) 27, 213, 295
FauNDI CATATG 1 cut(s) 497
Fnu4HI GCNGC 3 cut(s) 355, 366, 369
FokI GGATG 3 cut(s) 64, 428, 490
Fsp4HI GCNGC 3 cut(s) 355, 366, 369
FspBI CTAG 1 cut(s) 529
GlaI GCGC 1 cut(s) 175
GluI GCNGC 3 cut(s) 355, 366, 369
GsaI CCCAGC 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 524
HhaI GCGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 31, 217, 299
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 2 cut(s) 167, 325
HpaII CCGG 1 cut(s) 524
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 1 cut(s) 385
HpyAV CCTTC 3 cut(s) 64, 137, 506
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 117, 348, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 354
HpyF3I CTNAG 2 cut(s) 243, 309
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 3 cut(s) 31, 217, 299
HspAI GCGC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 156, 296, 347, 370, 444
Lsp1109I GCAGC 3 cut(s) 352, 366, 380
MaeI CTAG 1 cut(s) 529
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 14
MboII GAAGA 2 cut(s) 475, 493
MfeI CAATTG 1 cut(s) 58
MhlI GDGCHC 2 cut(s) 76, 495
MluCI AATT 5 cut(s) 58, 208, 282, 419, 438
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 2 cut(s) 247, 318
MseI TTAA 3 cut(s) 219, 291, 441
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 524
MunI CAATTG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 410
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 2 cut(s) 254, 354
NciI CCSGG 1 cut(s) 524
NcoI CCATGG 2 cut(s) 27, 213
NdeI CATATG 1 cut(s) 497
NlaIII CATG 3 cut(s) 31, 217, 299
NlaIV GGNNCC 1 cut(s) 75
PctI GAATGC 1 cut(s) 410
PfeI GAWTC 2 cut(s) 167, 325
PkrI GCNGC 3 cut(s) 356, 367, 370
PshAI GACNNNNGTC 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 441
Psp1406I AACGTT 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 370
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 3 cut(s) 219, 291, 441
SatI GCNGC 3 cut(s) 355, 366, 369
ScaI AGTACT 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 2 cut(s) 76, 495
SetI ASST 5 cut(s) 163, 310, 359, 460, 517
SfcI CTRYAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 5 cut(s) 58, 208, 282, 419, 438
SsiI CCGC 1 cut(s) 400
SspI AATATT 1 cut(s) 95
SspMI CTAG 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 2 cut(s) 27, 213
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 1 cut(s) 163
TasI AATT 5 cut(s) 58, 208, 282, 419, 438
TatI WGTACW 1 cut(s) 467
TfiI GAWTC 2 cut(s) 167, 325
Tru1I TTAA 3 cut(s) 219, 291, 441
Tru9I TTAA 3 cut(s) 219, 291, 441
TscAI CASTG 3 cut(s) 15, 106, 378
TseI GCWGC 3 cut(s) 354, 365, 368
TspDTI ATGAA 7 cut(s) 17, 53, 101, 204, 239, 432, 494
TspRI CASTG 3 cut(s) 15, 106, 378
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 1 cut(s) 419
XspI CTAG 1 cut(s) 529
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.