Rw4G015690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001472
Physical Location & Seq
Reverse (-)
36019262 .. 36021581
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G015690.1

Sequence Viewer

Length: 1707 bp
ATGAAGGCACTGGGTTACTTCAGTTCCATGGTTCAAATGAAACCCATTTGCTCCTTCAATTGTTTGTTTGGGGCACCATCCAAGATGAAGCAATATTCCACTGTTTTTTCTATGTGCAAGCAGATGATGAGTAATGCTTTGGAAGGCACGGCAGAAAAACGTTGTGAATCTGGCGCTCAGTATTCCACTGTGGTTTCTATGTATAATCACTTGATGGGTATTGCTCACTTCCAACCTGATGATAGTACAATGAATGTTGTCATTAATTGCTTGTGTCGTCTGAATCAGGCCGACTTGGGTCTCTCTGCTTTAGCAATTTCCCTTAAACATGGTTTTCAACCTCTGGCTTATTCTCTGAATCTTTTGGTTCGTGGGCTTTGCAAGAGCAGCTCTCTGGCTGCAGCAGTGGATTTGTTCTGGAAAATGGAACACCGCGAATGCGAATGGGATGAATTCACTTATGGTATCATAATTAATGAGTTATTCAAAGCTGGGAAGAGTACTGATGGGATGAAGATACTTGAGCACATATATTGTTACAATCCAATCATTGACAGCCTTTGTAAAGAAAGACGGCTAGATGAGGCTTTGACCATGTTACATGATATGATCAACAGAAGTGTTGTACCAAATGCCATCACTTACAAATCATTGTTTCATGGGTTATGCAATGTGGGTTATTGGGATAAAGTACTCGCTCTGTTCGAAACAATGAAGGATCAAGGAACCGCCCCTAATGTTGCCACCTTCAACACCCTAATACATGCACTTTGCCAGTCAGGTAAGAGGGAAAAGGCCCAAAGATTCTTGTCTTTCATGGCTGAGAGTGGAATTTCACCAAATGTATATACATATAATATCCTAATCAACAGTCACTGCAGGGAAGAAAGAATACAAGAAGCAGTTTCTGTGTTAGAAAAGATGACTAGCAAAGGCATAAAGCCTACTGTTGTCACTTTTAACTCCTTAATTTCTGCTTCATGCAAGTCTGGTCAATGGGAAAACGCTGTACAGTTATTTAAAAGTATGATTGAATTTGGAACCTTGCCTAATATTGTTACATTCAATGCTGTGTTGGATGCTTTATGCAAGAGAGGGAAGACATCAGAGGCACTTAATCTTTTCGAAGAAATGATCCGTAGAGGTGTAAAGCCTAATCTTTTCACCTACAACTCCTTAATTCATGGATTATGCCTTTCTAGCAAGTGGGGAGAGGCAACAAGCTTGCTTGATAGAATGATGGATGAACGAGTCTCACCAGATATTGTAACCTTAACCTCTGTAATAGATGCTCTTTGCAAGGAGAGAAGGACCAAGGACGCCCTCACTGTTTTACAGCTAATGACTCAAAGAGCCACAAGGTTGTATGATGAAATGGTTGGTCTGGGCATCTTACCTAATATGATAACTTTGACAACACTTTTCGATACTCTCTGCAAAGAAGGGATGACAGAAGACGCTCGCAAAGCAGTTGAGGCAACATTTCAATATGGTATGGAGGTTATCAAGATCACATTCAACATGCTGCTTCATGATTATTGTTTGCGTGGAAAAAGTGACAAGGCAGAGAAGGTCATTAGTTTTATGGTGTTGAAGGGTCATGTTCCTGATATTGCTTCCTGTACAACCTTGGACAATAACTTTGTAAAAGTTAACAGTATAGATGAAGCTTTGAGGGTTGTAAAGGAAATGATCCAAAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

568

Amino Acids

63.77

Weight (kDa)

7.97

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 118 - 163 2.4e-08 PPR repeat family
PPR_2 PF13041 177 - 224 3.5e-14 PPR repeat family
TPR_24 PF23276 178 - 266 1.1e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 178 - 203 1.5e-06 PPR repeat
PPR_long PF17177 186 - 333 3.4e-13 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 199 - 255 3.5e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 218 - 259 1.3e-11 PPR repeat family
PPR_3 PF13812 234 - 290 1.6e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 244 - 273 1.9e-08 PPR repeat
PPR_2 PF13041 245 - 294 1e-17 PPR repeat family
TPR_24 PF23276 270 - 377 1.7e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 277 - 309 1.5e-12 PPR repeat
PPR PF01535 283 - 313 1.2e-07 PPR repeat
PPR_2 PF13041 284 - 329 1e-14 PPR repeat family
PPR_3 PF13812 303 - 364 2.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 311 - 343 4.7e-11 PPR repeat
PPR_2 PF13041 315 - 364 1.7e-15 PPR repeat family
PPR PF01535 318 - 347 3.2e-08 PPR repeat
PPR_1 PF12854 349 - 378 1.2e-09 PPR repeat
PPR_2 PF13041 350 - 398 1.1e-20 PPR repeat family
PPR PF01535 353 - 383 2.7e-09 PPR repeat
PPR_3 PF13812 374 - 432 9.3e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 381 - 413 1.7e-10 PPR repeat
PPR PF01535 388 - 417 1e-05 PPR repeat
PPR_2 PF13041 388 - 434 1.5e-11 PPR repeat family
PPR_1 PF12854 418 - 448 2.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccII CGCG 1 cut(s) 435
AciI CCGC 2 cut(s) 433, 729
AclI AACGTT 1 cut(s) 160
AclWI GGATC 3 cut(s) 726, 1129, 1687
AcsI RAATTY 3 cut(s) 452, 831, 1034
AcuI CTGAAG 1 cut(s) 4
AcyI GRCGYC 1 cut(s) 1320
AfaI GTAC 6 cut(s) 247, 502, 627, 693, 1011, 1624
AluBI AGCT 5 cut(s) 390, 491, 1224, 1339, 1670
AluI AGCT 5 cut(s) 390, 491, 1224, 1339, 1670
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 305, 1258
AlwI GGATC 3 cut(s) 726, 1129, 1687
AlwNI CAGNNNCTG 2 cut(s) 876, 908
AoxI GGCC 2 cut(s) 288, 795
ApeKI GCWGC 4 cut(s) 387, 398, 401, 1525
ApoI RAATTY 3 cut(s) 452, 831, 1034
ArsI GACNNNNNNTTYG 2 cut(s) 1625, 1657
AseI ATTAAT 2 cut(s) 264, 474
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 796, 1311
AsuHPI GGTGA 3 cut(s) 828, 1156, 1248
AsuII TTCGAA 2 cut(s) 705, 1125
AvaII GGWCC 1 cut(s) 1311
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 876, 908
BbsI GAAGAC 2 cut(s) 1106, 1461
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 4 cut(s) 385, 399, 413, 1512
BccI CCATC 5 cut(s) 85, 208, 500, 644, 1234
BceAI ACGGC 2 cut(s) 165, 590
BclI TGATCA 1 cut(s) 609
BcoDI GTCTC 2 cut(s) 305, 1258
BfaI CTAG 3 cut(s) 578, 927, 1200
BfmI CTRYAG 2 cut(s) 399, 877
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 4 cut(s) 388, 399, 402, 1526
BlsI GCNGC 4 cut(s) 389, 400, 403, 1527
BmcAI AGTACT 2 cut(s) 502, 693
Bme18I GGWCC 1 cut(s) 1311
BmgT120I GGNCC 2 cut(s) 796, 1311
BmiI GGNNCC 3 cut(s) 75, 727, 1042
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 3 cut(s) 1069, 1279, 1398
BmuI ACTGGG 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 297
BpiI GAAGAC 2 cut(s) 1106, 1461
BplI GAGNNNNNCTC 2 cut(s) 376, 408
Bpu14I TTCGAA 2 cut(s) 705, 1125
BpuEI CTTGAG 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 1320
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 27, 1314, 1629
Bse1I ACTGG 2 cut(s) 15, 775
Bse3DI GCAATG 1 cut(s) 676
BseDI CCNNGG 3 cut(s) 27, 1314, 1629
BseGI GGATG 6 cut(s) 77, 454, 516, 1084, 1249, 1452
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 2 cut(s) 191, 813
BseNI ACTGG 2 cut(s) 15, 775
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 4 cut(s) 385, 399, 413, 1512
BseYI CCCAGC 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 2 cut(s) 290, 797
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 528
BsmAI GTCTC 2 cut(s) 305, 1258
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 2 cut(s) 290, 797
Bso31I GGTCTC 1 cut(s) 305
Bsp119I TTCGAA 2 cut(s) 705, 1125
Bsp1286I GDGCHC 2 cut(s) 76, 528
Bsp1407I TGTACA 2 cut(s) 1009, 1622
Bsp143I GATC 5 cut(s) 609, 718, 1134, 1509, 1692
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 2 cut(s) 433, 729
BspANI GGCC 2 cut(s) 290, 797
BspCNI CTCAG 2 cut(s) 190, 814
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 1531
BspLI GGNNCC 3 cut(s) 75, 727, 1042
BspMAI CTGCAG 2 cut(s) 403, 881
BspPI GGATC 3 cut(s) 726, 1129, 1687
BspT104I TTCGAA 2 cut(s) 705, 1125
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 676
BsrGI TGTACA 2 cut(s) 1009, 1622
BsrI ACTGG 2 cut(s) 15, 775
BssECI CCNNGG 3 cut(s) 27, 1314, 1629
BssMI GATC 5 cut(s) 609, 718, 1134, 1509, 1692
BssNI GRCGYC 1 cut(s) 1320
BssT1I CCWWGG 3 cut(s) 27, 1314, 1629
Bst4CI ACNGT 7 cut(s) 103, 190, 872, 949, 1014, 1330, 1658
Bst6I CTCTTC 1 cut(s) 491
BstACI GRCGYC 1 cut(s) 1320
BstAUI TGTACA 2 cut(s) 1009, 1622
BstBI TTCGAA 2 cut(s) 705, 1125
BstC8I GCNNGC 3 cut(s) 119, 1226, 1462
BstDEI CTNAG 2 cut(s) 177, 822
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 6 cut(s) 77, 454, 516, 1084, 1249, 1452
BstFNI CGCG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 5 cut(s) 612, 721, 1137, 1512, 1695
BstMAI GTCTC 2 cut(s) 305, 1258
BstMBI GATC 5 cut(s) 609, 718, 1134, 1509, 1692
BstMWI GCNNNNNNNGC 4 cut(s) 387, 1200, 1466, 1475
BstNSI RCATGY 2 cut(s) 767, 1525
BstPAI GACNNNNGTC 1 cut(s) 297
BstSFI CTRYAG 2 cut(s) 399, 877
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 4 cut(s) 385, 399, 413, 1512
BstV2I GAAGAC 2 cut(s) 1106, 1461
BsuRI GGCC 2 cut(s) 290, 797
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 6 cut(s) 77, 454, 516, 1084, 1249, 1452
BtsI GCAGTG 2 cut(s) 411, 874
BtsIMutI CAGTG 6 cut(s) 8, 99, 186, 411, 874, 1326
Cac8I GCNNGC 3 cut(s) 119, 1226, 1462
CaiI CAGNNNCTG 2 cut(s) 876, 908
CciI TCATGA 1 cut(s) 1531
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 796, 1311
CseI GACGC 2 cut(s) 1328, 1466
Csp6I GTAC 6 cut(s) 246, 501, 626, 692, 1010, 1623
CviQI GTAC 6 cut(s) 246, 501, 626, 692, 1010, 1623
DdeI CTNAG 2 cut(s) 177, 822
DpnI GATC 5 cut(s) 611, 720, 1136, 1511, 1694
DpnII GATC 5 cut(s) 609, 718, 1134, 1509, 1692
DraI TTTAAA 1 cut(s) 1021
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco130I CCWWGG 3 cut(s) 27, 1314, 1629
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 1311
Eco57I CTGAAG 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 452
EcoT14I CCWWGG 3 cut(s) 27, 1314, 1629
ErhI CCWWGG 3 cut(s) 27, 1314, 1629
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 4 cut(s) 388, 399, 402, 1526
FokI GGATG 6 cut(s) 64, 461, 523, 1091, 1256, 1459
Fsp4HI GCNGC 4 cut(s) 388, 399, 402, 1526
FspBI CTAG 3 cut(s) 578, 927, 1200
GlaI GCGC 1 cut(s) 175
GluI GCNGC 4 cut(s) 388, 399, 402, 1526
GsaI CCCAGC 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 2 cut(s) 290, 797
HgaI GACGC 2 cut(s) 1328, 1466
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 1320
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 1654
HindII GTYRAC 1 cut(s) 1654
HindIII AAGCTT 2 cut(s) 1222, 1668
HinfI GANTC 6 cut(s) 167, 283, 358, 804, 1251, 1345
HpaI GTTAAC 1 cut(s) 1654
HphI GGTGA 3 cut(s) 828, 1156, 1248
Hpy166II GTNNAC 1 cut(s) 1654
Hpy188I TCNGA 3 cut(s) 282, 357, 1108
Hpy188III TCNNGA 4 cut(s) 418, 1507, 1532, 1607
Hpy8I GTNNAC 1 cut(s) 1654
HpyAV CCTTC 8 cut(s) 64, 137, 709, 757, 1302, 1436, 1564, 1588
HpyCH4III ACNGT 7 cut(s) 103, 190, 872, 949, 1014, 1330, 1658
HpyCH4IV ACGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 4 cut(s) 387, 1200, 1466, 1475
HpyF3I CTNAG 2 cut(s) 177, 822
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 1320
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 609
KspAI GTTAAC 1 cut(s) 1654
Kzo9I GATC 5 cut(s) 609, 718, 1134, 1509, 1692
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 4 cut(s) 385, 399, 413, 1512
LweI GCATC 3 cut(s) 1069, 1279, 1398
MaeI CTAG 3 cut(s) 578, 927, 1200
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 8 cut(s) 14, 536, 597, 872, 952, 1057, 1267, 1556
MalI GATC 5 cut(s) 611, 720, 1136, 1511, 1694
MboI GATC 5 cut(s) 609, 718, 1134, 1509, 1692
MboII GAAGA 6 cut(s) 508, 526, 896, 1111, 1139, 1466
MfeI CAATTG 1 cut(s) 58
MhlI GDGCHC 2 cut(s) 76, 528
MluCI AATT 9 cut(s) 58, 265, 315, 452, 471, 831, 969, 1034, 1179
MlyI GAGTC 2 cut(s) 1260, 1339
MmeI TCCRAC 2 cut(s) 256, 1056
MunI CAATTG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 443
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 4 cut(s) 387, 1200, 1466, 1475
NcoI CCATGG 1 cut(s) 27
NdeII GATC 5 cut(s) 609, 718, 1134, 1509, 1692
NlaIV GGNNCC 3 cut(s) 75, 727, 1042
NmuCI GTSAC 3 cut(s) 872, 952, 1556
NspI RCATGY 2 cut(s) 767, 1525
NspV TTCGAA 2 cut(s) 705, 1125
PagI TCATGA 1 cut(s) 1531
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 4 cut(s) 167, 283, 358, 804
PkrI GCNGC 4 cut(s) 389, 400, 403, 1527
PleI GAGTC 2 cut(s) 1259, 1339
PpsI GAGTC 2 cut(s) 1259, 1339
PshAI GACNNNNGTC 1 cut(s) 297
PshBI ATTAAT 2 cut(s) 264, 474
Psp1406I AACGTT 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 491
PspN4I GGNNCC 3 cut(s) 75, 727, 1042
PspPI GGNCC 2 cut(s) 796, 1311
PstI CTGCAG 2 cut(s) 403, 881
PstNI CAGNNNCTG 2 cut(s) 876, 908
RsaI GTAC 6 cut(s) 247, 502, 627, 693, 1011, 1624
RsaNI GTAC 6 cut(s) 246, 501, 626, 692, 1010, 1623
SatI GCNGC 4 cut(s) 388, 399, 402, 1526
Sau3AI GATC 5 cut(s) 609, 718, 1134, 1509, 1692
Sau96I GGNCC 2 cut(s) 796, 1311
ScaI AGTACT 2 cut(s) 502, 693
SchI GAGTC 2 cut(s) 1260, 1339
SduI GDGCHC 2 cut(s) 76, 528
SfaNI GCATC 3 cut(s) 1069, 1279, 1398
SfcI CTRYAG 2 cut(s) 399, 877
SfuI TTCGAA 2 cut(s) 705, 1125
SinI GGWCC 1 cut(s) 1311
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 9 cut(s) 58, 265, 315, 452, 471, 831, 969, 1034, 1179
SsiI CCGC 2 cut(s) 433, 729
SspI AATATT 2 cut(s) 95, 1054
SspMI CTAG 3 cut(s) 578, 927, 1200
StyI CCWWGG 3 cut(s) 27, 1314, 1629
TaaI ACNGT 7 cut(s) 103, 190, 872, 949, 1014, 1330, 1658
TaiI ACGT 1 cut(s) 163
TaqI TCGA 3 cut(s) 705, 1125, 1425
TasI AATT 9 cut(s) 58, 265, 315, 452, 471, 831, 969, 1034, 1179
TatI WGTACW 5 cut(s) 245, 500, 691, 1009, 1622
TfiI GAWTC 4 cut(s) 167, 283, 358, 804
TscAI CASTG 6 cut(s) 15, 106, 193, 411, 881, 1333
TseFI GTSAC 3 cut(s) 872, 952, 1556
TseI GCWGC 4 cut(s) 387, 398, 401, 1525
Tsp45I GTSAC 3 cut(s) 872, 952, 1556
TspGWI ACGGA 1 cut(s) 1127
TspRI CASTG 6 cut(s) 15, 106, 193, 411, 881, 1333
VpaK11BI GGWCC 1 cut(s) 1311
VspI ATTAAT 2 cut(s) 264, 474
XapI RAATTY 3 cut(s) 452, 831, 1034
XceI RCATGY 2 cut(s) 767, 1525
XspI CTAG 3 cut(s) 578, 927, 1200
ZrmI AGTACT 2 cut(s) 502, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.