Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

62352179 .. 62352965

Gene Structure 787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGACCTGTTTGAGGAAATGATCTCAAAGGATCAGATATTGCCTGATGTGCTAACGTACAACATTTTGATTAACGGTTTTTGCCGTGGTGGGAAAGTTGATAGGGCAAGGAAGATATTGGATTTTATGAAGAGCAAGGGATGCAACCCAAATGTATTCAATTACTCAGCTCTGATGAATGGATTCTGTAAGGAGGAAAGGTTGGAAGAGGCCAAGGAGCTTTTGGATGAAATGAAGAGCTTTGGTATCAAACCAGATACGGTTGTCTACACTACTTTAATTGATTGCTACTTTAGGACTGGGAGAGTTGATGAAGCAATAGAGTTGCTCAAAGAGATGAAAGAAAGACGGTGCAAAGCTGATACTGTGACTTTCAATGTGATACTTGGAGGACTATGTAGAGAAGGTAGAATTGAGGATGCGCTTGAGATGCTGGACAAACTTCCTTATGAGGGTATCTATCTGAATAAGGGAAGCTACAGGATTGTGTTGAATTCATTGTGTCAGAAGGGCGAACTAAACAAAGCTAAAGAGTTGTTGAGATTGATGATGGGTAGGGGGTTTGTACCACATTATGCAACTTCAAACCAGTTGCTAGTTAGCCTTTGTGAGGCTGGAATGGCAGATGATGCAATTATGGCTTTATTTGGATTGGTGGAGATGGGATTCAAGCCACTGCCTGATTCCTGGACTCTTTTTGTTGAATCAATTTGCAGAGAAAGAAAGCTGCTGCCTGCATTTGAACTGCTCGATGAATTAGTGAATGAAGAGTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

259

Amino Acids

29.61

Weight (kDa)

4.97

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 29	9.8e-07	PPR repeat family
PPR_long	PF17177	2 - 147	6.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	4 - 62	5.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	13 - 44	1.4e-13	PPR repeat
PPR_2	PF13041	15 - 64	5.7e-18	PPR repeat family
PPR	PF01535	19 - 48	5.7e-09	PPR repeat
PPR_1	PF12854	46 - 79	3.1e-13	PPR repeat
PPR_2	PF13041	50 - 94	5.8e-14	PPR repeat family
TPR_24	PF23276	54 - 143	1.9e-08	Fungal tetratrico peptide repeats
PPR	PF01535	55 - 83	1.3e-08	PPR repeat
PPR_long	PF17177	68 - 178	2.3e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	74 - 130	9.1e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	82 - 114	2.5e-13	PPR repeat
PPR_2	PF13041	85 - 134	9.8e-19	PPR repeat family
PPR	PF01535	88 - 118	2.9e-10	PPR repeat
PPR_1	PF12854	117 - 147	3.7e-10	PPR repeat
PPR_2	PF13041	121 - 169	1.8e-11	PPR repeat family
PPR	PF01535	123 - 153	6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	2 cut(s)	59, 567
AfiI	CCNNNNNNNGG	3 cut(s)	13, 452, 610
AgsI	TTSAA	7 cut(s)	160, 376, 493, 585, 670, 704, 743
AjnI	CCWGG	1 cut(s)	686
AluBI	AGCT	7 cut(s)	170, 220, 240, 359, 477, 527, 727
AluI	AGCT	7 cut(s)	170, 220, 240, 359, 477, 527, 727
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	727, 730
ApoI	RAATTY	1 cut(s)	493
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BbvI	GCAGC	2 cut(s)	714, 717
BccI	CCATC	2 cut(s)	544, 655
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	688
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	478
BisI	GCNGC	2 cut(s)	728, 731
BlsI	GCNGC	2 cut(s)	729, 732
Bme1390I	CCNGG	1 cut(s)	688
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	688
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	4 cut(s)	131, 409, 420, 619
BmuI	ACTGGG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	85, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 452, 610
Bse1I	ACTGG	2 cut(s)	304, 589
BseBI	CCWGG	1 cut(s)	688
BseDI	CCNNGG	2 cut(s)	85, 213
BseGI	GGATG	3 cut(s)	146, 232, 424
BseLI	CCNNNNNNNGG	3 cut(s)	13, 452, 610
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	304, 589
BseXI	GCAGC	2 cut(s)	714, 717
BshFI	GGCC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	13, 452, 610
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	21, 31
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	179
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	2 cut(s)	125, 230
BsrI	ACTGG	2 cut(s)	304, 589
BssECI	CCNNGG	2 cut(s)	85, 213
BssMI	GATC	2 cut(s)	21, 31
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	688
Bst4CI	ACNGT	4 cut(s)	77, 262, 351, 367
Bst6I	CTCTTC	4 cut(s)	125, 201, 230, 762
BstAPI	GCANNNNNTGC	2 cut(s)	141, 629
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	85
BstENI	CCTNNNNNAGG	2 cut(s)	11, 608
BstF5I	GGATG	3 cut(s)	146, 232, 424
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	24, 34
BstMBI	GATC	2 cut(s)	21, 31
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 141, 430, 620, 629, 638
BstNI	CCWGG	1 cut(s)	688
BstSCI	CCNGG	1 cut(s)	686
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	714, 717
BsuRI	GGCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	3 cut(s)	146, 232, 424
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	735
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	58, 566
CviQI	GTAC	2 cut(s)	58, 566
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	23, 33
DpnII	GATC	2 cut(s)	21, 31
Eam1104I	CTCTTC	4 cut(s)	125, 201, 230, 762
EarI	CTCTTC	4 cut(s)	125, 201, 230, 762
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	2 cut(s)	11, 608
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	686
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaiI	YATR	5 cut(s)	128, 397, 450, 576, 638
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	728, 731
FokI	GGATG	3 cut(s)	153, 239, 431
Fsp4HI	GCNGC	2 cut(s)	728, 731
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	2 cut(s)	728, 731
HaeIII	GGCC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	5 cut(s)	183, 666, 683, 691, 704
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	4 cut(s)	36, 174, 465, 507
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	398, 502
HpyCH4III	ACNGT	4 cut(s)	77, 262, 351, 367
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	6 cut(s)	144, 354, 578, 632, 714, 737
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 141, 430, 620, 629, 638
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	56
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	2 cut(s)	21, 31
LguI	GCTCTTC	2 cut(s)	125, 230
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	714, 717
LweI	GCATC	4 cut(s)	131, 409, 420, 619
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	23, 33
MboI	GATC	2 cut(s)	21, 31
MboII	GAAGA	5 cut(s)	124, 142, 218, 247, 779
MluCI	AATT	7 cut(s)	160, 279, 411, 493, 633, 708, 755
MlyI	GAGTC	1 cut(s)	685
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	7, 187, 202, 383, 409, 445, 604
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	3 cut(s)	72, 278, 778
MspR9I	CCNGG	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	688
MwoI	GCNNNNNNNGC	6 cut(s)	49, 141, 430, 620, 629, 638
NdeII	GATC	2 cut(s)	21, 31
NmuCI	GTSAC	1 cut(s)	367
PciSI	GCTCTTC	2 cut(s)	125, 230
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	4 cut(s)	183, 666, 683, 704
PfoI	TCCNGGA	1 cut(s)	686
PkrI	GCNGC	2 cut(s)	729, 732
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	686
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	59, 567
RsaNI	GTAC	2 cut(s)	58, 566
SapI	GCTCTTC	2 cut(s)	125, 230
SaqAI	TTAA	3 cut(s)	72, 278, 778
SatI	GCNGC	2 cut(s)	728, 731
Sau3AI	GATC	2 cut(s)	21, 31
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	685
ScrFI	CCNGG	1 cut(s)	688
SfaNI	GCATC	4 cut(s)	131, 409, 420, 619
SfcI	CTRYAG	1 cut(s)	478
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	7 cut(s)	160, 279, 411, 493, 633, 708, 755
SspMI	CTAG	1 cut(s)	596
StyD4I	CCNGG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	4 cut(s)	77, 262, 351, 367
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	750, 774
TasI	AATT	7 cut(s)	160, 279, 411, 493, 633, 708, 755
TfiI	GAWTC	4 cut(s)	183, 666, 683, 704
Tru1I	TTAA	3 cut(s)	72, 278, 778
Tru9I	TTAA	3 cut(s)	72, 278, 778
TscAI	CASTG	1 cut(s)	681
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	727, 730
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	9 cut(s)	143, 191, 243, 248, 327, 353, 486, 768, 780
TspRI	CASTG	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	2 cut(s)	11, 608
XapI	RAATTY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.