endonuclease activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 53 | 2.2e-13 | Pentatricopeptide repeat domain |
| PPR_long | PF17177 | 1 - 105 | 5e-12 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 2 - 105 | 3.7e-12 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 7 - 36 | 6.2e-09 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 3.5e-19 | PPR repeat family |
| PPR_1 | PF12854 | 40 - 72 | 1.8e-13 | PPR repeat |
| PPR | PF01535 | 46 - 76 | 1.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 47 - 92 | 1e-15 | PPR repeat family |
| PPR_3 | PF13812 | 62 - 89 | 1.1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 74 - 104 | 4.1e-11 | PPR repeat |
| PPR_2 | PF13041 | 78 - 104 | 3.5e-07 | PPR repeat family |
| PPR | PF01535 | 81 - 104 | 4.7e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 18 |
| AclWI | GGATC | 1 cut(s) | 15 |
| AcsI | RAATTY | 1 cut(s) | 120 |
| AfaI | GTAC | 1 cut(s) | 300 |
| AgsI | TTSAA | 2 cut(s) | 40, 389 |
| AluBI | AGCT | 1 cut(s) | 296 |
| AluI | AGCT | 1 cut(s) | 296 |
| AlwI | GGATC | 1 cut(s) | 15 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 165, 197 |
| AoxI | GGCC | 1 cut(s) | 84 |
| ApoI | RAATTY | 1 cut(s) | 120 |
| AspS9I | GGNCC | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 1 cut(s) | 117 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 165, 197 |
| BfaI | CTAG | 1 cut(s) | 216 |
| BfmI | CTRYAG | 1 cut(s) | 166 |
| BmgT120I | GGNCC | 1 cut(s) | 85 |
| BmiI | GGNNCC | 1 cut(s) | 16 |
| Bse1I | ACTGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 102 |
| BseNI | ACTGG | 1 cut(s) | 64 |
| BshFI | GGCC | 1 cut(s) | 86 |
| BsnI | GGCC | 1 cut(s) | 86 |
| Bsp1407I | TGTACA | 1 cut(s) | 298 |
| Bsp143I | GATC | 1 cut(s) | 7 |
| BspACI | CCGC | 1 cut(s) | 18 |
| BspANI | GGCC | 1 cut(s) | 86 |
| BspCNI | CTCAG | 1 cut(s) | 103 |
| BspHI | TCATGA | 1 cut(s) | 343 |
| BspLI | GGNNCC | 1 cut(s) | 16 |
| BspMAI | CTGCAG | 1 cut(s) | 170 |
| BspPI | GGATC | 1 cut(s) | 15 |
| BsrGI | TGTACA | 1 cut(s) | 298 |
| BsrI | ACTGG | 1 cut(s) | 64 |
| BssMI | GATC | 1 cut(s) | 7 |
| Bst4CI | ACNGT | 3 cut(s) | 161, 238, 303 |
| BstAUI | TGTACA | 1 cut(s) | 298 |
| BstC8I | GCNNGC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 1 cut(s) | 111 |
| BstKTI | GATC | 1 cut(s) | 10 |
| BstMBI | GATC | 1 cut(s) | 7 |
| BstNSI | RCATGY | 2 cut(s) | 56, 356 |
| BstSFI | CTRYAG | 1 cut(s) | 166 |
| BsuRI | GGCC | 1 cut(s) | 86 |
| BtsI | GCAGTG | 1 cut(s) | 163 |
| BtsIMutI | CAGTG | 1 cut(s) | 163 |
| Cac8I | GCNNGC | 1 cut(s) | 354 |
| CaiI | CAGNNNCTG | 2 cut(s) | 165, 197 |
| CciI | TCATGA | 1 cut(s) | 343 |
| Cfr13I | GGNCC | 1 cut(s) | 85 |
| Csp6I | GTAC | 1 cut(s) | 299 |
| CviAII | CATG | 5 cut(s) | 53, 106, 270, 344, 353 |
| CviJI | RGCY | 4 cut(s) | 86, 110, 232, 296 |
| CviKI_1 | RGCY | 4 cut(s) | 86, 110, 232, 296 |
| CviQI | GTAC | 1 cut(s) | 299 |
| DdeI | CTNAG | 1 cut(s) | 111 |
| DpnI | GATC | 1 cut(s) | 9 |
| DpnII | GATC | 1 cut(s) | 7 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| FaeI | CATG | 5 cut(s) | 56, 109, 273, 347, 356 |
| FatI | CATG | 5 cut(s) | 52, 105, 269, 343, 352 |
| FspBI | CTAG | 1 cut(s) | 216 |
| HaeIII | GGCC | 1 cut(s) | 86 |
| Hin1II | CATG | 5 cut(s) | 56, 109, 273, 347, 356 |
| HinfI | GANTC | 2 cut(s) | 93, 340 |
| HphI | GGTGA | 1 cut(s) | 117 |
| Hpy166II | GTNNAC | 1 cut(s) | 334 |
| Hpy188III | TCNNGA | 1 cut(s) | 344 |
| Hpy8I | GTNNAC | 1 cut(s) | 334 |
| HpyAV | CCTTC | 2 cut(s) | 46, 383 |
| HpyCH4III | ACNGT | 3 cut(s) | 161, 238, 303 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 168, 273 |
| HpyF3I | CTNAG | 1 cut(s) | 111 |
| Hsp92II | CATG | 5 cut(s) | 56, 109, 273, 347, 356 |
| Kzo9I | GATC | 1 cut(s) | 7 |
| LpnPI | CCDG | 6 cut(s) | 54, 77, 154, 264, 347, 350 |
| MaeI | CTAG | 1 cut(s) | 216 |
| MaeIII | GTNAC | 2 cut(s) | 161, 241 |
| MalI | GATC | 1 cut(s) | 9 |
| MboI | GATC | 1 cut(s) | 7 |
| MboII | GAAGA | 1 cut(s) | 185 |
| MluCI | AATT | 3 cut(s) | 120, 258, 384 |
| MnlI | CCTC | 2 cut(s) | 69, 319 |
| MseI | TTAA | 3 cut(s) | 249, 257, 309 |
| NdeII | GATC | 1 cut(s) | 7 |
| NlaIII | CATG | 5 cut(s) | 56, 109, 273, 347, 356 |
| NlaIV | GGNNCC | 1 cut(s) | 16 |
| NmuCI | GTSAC | 2 cut(s) | 161, 241 |
| NspI | RCATGY | 2 cut(s) | 56, 356 |
| PaeI | GCATGC | 1 cut(s) | 356 |
| PagI | TCATGA | 1 cut(s) | 343 |
| PfeI | GAWTC | 2 cut(s) | 93, 340 |
| PspN4I | GGNNCC | 1 cut(s) | 16 |
| PspPI | GGNCC | 1 cut(s) | 85 |
| PstI | CTGCAG | 1 cut(s) | 170 |
| PstNI | CAGNNNCTG | 2 cut(s) | 165, 197 |
| RsaI | GTAC | 1 cut(s) | 300 |
| RsaNI | GTAC | 1 cut(s) | 299 |
| SaqAI | TTAA | 3 cut(s) | 249, 257, 309 |
| Sau3AI | GATC | 1 cut(s) | 7 |
| Sau96I | GGNCC | 1 cut(s) | 85 |
| SetI | ASST | 7 cut(s) | 38, 73, 298, 330, 339, 366, 394 |
| SfcI | CTRYAG | 1 cut(s) | 166 |
| SphI | GCATGC | 1 cut(s) | 356 |
| Sse9I | AATT | 3 cut(s) | 120, 258, 384 |
| SsiI | CCGC | 1 cut(s) | 18 |
| SspMI | CTAG | 1 cut(s) | 216 |
| TaaI | ACNGT | 3 cut(s) | 161, 238, 303 |
| TasI | AATT | 3 cut(s) | 120, 258, 384 |
| TatI | WGTACW | 1 cut(s) | 298 |
| TfiI | GAWTC | 2 cut(s) | 93, 340 |
| Tru1I | TTAA | 3 cut(s) | 249, 257, 309 |
| Tru9I | TTAA | 3 cut(s) | 249, 257, 309 |
| TscAI | CASTG | 1 cut(s) | 170 |
| TseFI | GTSAC | 2 cut(s) | 161, 241 |
| Tsp45I | GTSAC | 2 cut(s) | 161, 241 |
| TspDTI | ATGAA | 4 cut(s) | 17, 94, 258, 332 |
| TspRI | CASTG | 1 cut(s) | 170 |
| XapI | RAATTY | 1 cut(s) | 120 |
| XceI | RCATGY | 2 cut(s) | 56, 356 |
| XspI | CTAG | 1 cut(s) | 216 |