Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

11732980 .. 11736218

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1128800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGCCTAACATAATTGTCTACAACACGATCATCGACAGTCTTTGCAAAGATGCTCTAGTTGTTGATTCACTGAACCTCTTTTTAGAAATGACGAGTAAGGCCATTGCTCCCAATGTCATTACCTATACCTCTTTGATTCACGGAGTTTGCAAAGTAAGGAAGTGGAAAGAAGCTACAAAATTGTTGAATGAAATGGTGGAGAAACATATCAGTCCAGATGTGCACACCTTCAATGTCTTGGTTGATACATTTTGCAAAGAGAGGATGGTCCAGGAAGCAAGGAGCGTGGTTGAGATGATGATGCAAAGATATATCAAACCTAGTACAATCACGTACAATTCGCTTATGGATGGGTATTGTTTGCGGGGAGAAATGGACGAGGTAAAAGAGGTTTTTGAAGTAATGGCTATTATTGAGGAAAAGAAGTTGGATATTGGTATTGTAACTTATAATATTCTTATTGACGGTTTGTGCAGAGCTGAAAAAGTTGAATATGCATGGGATTTCTTTCGTTGTTTATCATCAAAAGGAATTCAACCTAATGGCAAGACATATACTATAATGATTCGTGGATTATGTAATGGGGGGCAAATATGTGAAACGGAAAACTTGCTCAGAGAAATGAAAAAGAAAGGCTGTTCTCCAGATGGTTGGACGTACAACACAATTATTCGAGGGTTTATCAATAACAATGAGACATCAACAGGAGTGAGGCTTATTCAAGAAATGGTGAAGAGGGATTTTTCTGCAGATGTATCAACTACGGAGTTGATTGTTAATTTATTGTCTAAAGATAGGCATTACCATAATACCATTAGCACCAGAGGTATGCTGCCTCGCCTTCTTCAATCTTCTTATGTCGTTGTTTTCTTCAACAATTACTTGGGTTTGTTTCACTCTCGAGCTTCTAAATTGACGGAATCAAGAAACACCCAACAACACCTGCGTGTGAAAATCACTAATGTTGAGGATGCTCTCAATGTGTTCGACGAAATGCTTCAAAGGCGTCCTCTGCCTTCTATTATCCCTTTCACTCAAGTGTTGGGTCAACTTGCCAAGTTGAAAAATTACTCAACAATCATCTCCTTGAACAACCAAATGGTTATGTCTAGAAATCGTCCAAATGCTTATACTCTAACCATTATCATTAATTGCTTTTGTCATCTCAACCAAATGGAGTTTAGTTTGTCAGTCTTAGGTATCTTATTCAAATTAGGTTTTGAGCCAAATGTCACAACCTACACCACTCTAATAAACGACTTTCTTCTTAAGAATAGAGAGGCTAAGGCAGCAACACTTTTCAACAAAATGATAGAGAGAGGTAATTGCAAGCCTGATGTGGTTACTTTCGGTACACTAGTAAAGGGCCTCTACTTGAAAGGTAACAATACTGCAGCAATCCAATTGCTTAAGAAGATGGAAGGAGCTTGCAAGCCTGATGTAGTTGTCTATAGCACAATCATGGACAGTCTTTGCAAGGATACTCTAGTTGTTGATGCACTAAACCTCTTCTCAGAAATGATGAGTAAGGGCATTGCTCCCGCCATCATTACCTATACCTCATGGATTTTGCAAAGTAGAGAATTGGAAAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

533

Amino Acids

60.56

Weight (kDa)

8.68

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	2 - 51	1.5e-14	PPR repeat family
PPR_1	PF12854	2 - 30	6.3e-06	PPR repeat
PPR_long	PF17177	20 - 133	2.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	26 - 85	2e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	35 - 66	1.1e-10	PPR repeat
PPR_2	PF13041	38 - 86	4.2e-17	PPR repeat family
MRP-S27	PF10037	38 - 103	6.8e-07	Mitochondrial 28S ribosomal protein S27
PPR	PF01535	40 - 69	7.3e-07	PPR repeat
TPR_24	PF23276	60 - 171	3.3e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	68 - 100	2.5e-07	PPR repeat
PPR_2	PF13041	74 - 120	4.7e-11	PPR repeat family
PPR_1	PF12854	105 - 135	3.3e-08	PPR repeat
PPR	PF01535	110 - 135	2.1e-06	PPR repeat
PPR_2	PF13041	147 - 194	1.8e-17	PPR repeat family
PPR_1	PF12854	147 - 171	7.4e-08	PPR repeat
PPR	PF01535	148 - 178	5.4e-06	PPR repeat
PPR_3	PF13812	173 - 227	7.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	176 - 209	5.3e-07	PPR repeat
PPR_2	PF13041	191 - 228	3.9e-09	PPR repeat family
PPR_2	PF13041	219 - 262	4.4e-06	PPR repeat family
PPR_2	PF13041	409 - 457	9.3e-10	PPR repeat family
PPR_3	PF13812	439 - 489	8.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	442 - 474	1.3e-06	PPR repeat
PPR_2	PF13041	445 - 493	1.6e-08	PPR repeat family
PPR_1	PF12854	477 - 507	2.6e-09	PPR repeat
PPR_2	PF13041	479 - 521	2.4e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AarI	CACCTGC	1 cut(s)	951
Acc36I	ACCTGC	1 cut(s)	951
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	364, 1542
AcsI	RAATTY	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	1006
AfaI	GTAC	4 cut(s)	325, 335, 659, 1354
AflII	CTTAAG	2 cut(s)	1268, 1409
AhlI	ACTAGT	1 cut(s)	1357
AjnI	CCWGG	1 cut(s)	270
AleI	CACNNNNGTG	2 cut(s)	945, 1037
AluBI	AGCT	5 cut(s)	173, 479, 905, 1427, 1596
AluI	AGCT	5 cut(s)	173, 479, 905, 1427, 1596
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	689
Alw44I	GTGCAC	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	900
AoxI	GGCC	2 cut(s)	99, 1366
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	832, 1289, 1394
ApoI	RAATTY	1 cut(s)	531
AseI	ATTAAT	1 cut(s)	1149
Asp700I	GAANNNNTTC	1 cut(s)	996
AspS9I	GGNCC	2 cut(s)	268, 1366
AsuHPI	GGTGA	1 cut(s)	742
AvaI	CYCGRG	1 cut(s)	900
AvaII	GGWCC	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	225
BaeI	ACNNNNGTAYC	4 cut(s)	1344, 1377, 1473, 1506
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	819, 1301, 1406
BccI	CCATC	5 cut(s)	259, 344, 641, 1411, 1553
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	1474
BcoDI	GTCTC	1 cut(s)	689
BcuI	ACTAGT	1 cut(s)	1357
BfaI	CTAG	5 cut(s)	56, 321, 1110, 1358, 1487
BfmI	CTRYAG	3 cut(s)	747, 1392, 1450
BfrI	CTTAAG	2 cut(s)	1268, 1409
BfuAI	ACCTGC	1 cut(s)	951
BfuI	GTATCC	1 cut(s)	1474
BisI	GCNGC	3 cut(s)	833, 1290, 1395
BlsI	GCNGC	3 cut(s)	834, 1291, 1396
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	900
BmgT120I	GGNCC	2 cut(s)	268, 1366
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	4 cut(s)	40, 291, 961, 1486
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	1284
BpuEI	CTTGAG	1 cut(s)	1020
BsaAI	YACGTR	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	1006
Bse3DI	GCAATG	2 cut(s)	102, 1533
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	3 cut(s)	270, 355, 976
BseMI	GCAATG	2 cut(s)	102, 1533
BseMII	CTCAG	2 cut(s)	628, 1527
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	819, 1301, 1406
BsgI	GTGCAG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	101, 1368
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	900
BsmAI	GTCTC	1 cut(s)	689
BsnI	GGCC	2 cut(s)	101, 1368
BsoBI	CYCGRG	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	2 cut(s)	364, 1542
BspANI	GGCC	2 cut(s)	101, 1368
BspCNI	CTCAG	2 cut(s)	627, 1526
BspMAI	CTGCAG	2 cut(s)	751, 1396
BspMI	ACCTGC	1 cut(s)	951
BspTI	CTTAAG	2 cut(s)	1268, 1409
BsrDI	GCAATG	2 cut(s)	102, 1533
BssMI	GATC	1 cut(s)	27
BssNI	GRCGYC	1 cut(s)	1006
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	38, 467, 1469
Bst6I	CTCTTC	2 cut(s)	728, 1514
BstACI	GRCGYC	1 cut(s)	1006
BstAFI	CTTAAG	2 cut(s)	1268, 1409
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	1331, 1429, 1433
BstDEI	CTNAG	4 cut(s)	614, 1195, 1284, 1513
BstF5I	GGATG	3 cut(s)	270, 355, 976
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	3 cut(s)	1003, 1012, 1289
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	3 cut(s)	747, 1392, 1450
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	819, 1301, 1406
BstXI	CCANNNNNNTGG	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	1474
BsuRI	GGCC	2 cut(s)	101, 1368
BtsCI	GGATG	3 cut(s)	270, 355, 976
BtsIMutI	CAGTG	1 cut(s)	68
BveI	ACCTGC	1 cut(s)	951
Cac8I	GCNNGC	3 cut(s)	1331, 1429, 1433
Cfr13I	GGNCC	2 cut(s)	268, 1366
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	4 cut(s)	324, 334, 658, 1353
CspCI	CAANNNNNGTGG	2 cut(s)	267, 302
CviAII	CATG	3 cut(s)	498, 1462, 1563
CviQI	GTAC	4 cut(s)	324, 334, 658, 1353
DdeI	CTNAG	4 cut(s)	614, 1195, 1284, 1513
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	728, 1514
EarI	CTCTTC	2 cut(s)	728, 1514
Eco47I	GGWCC	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	900
EcoO109I	RGGNCCY	1 cut(s)	1366
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	499
FaeI	CATG	3 cut(s)	501, 1465, 1566
FatI	CATG	3 cut(s)	497, 1461, 1562
FauI	CCCGC	2 cut(s)	357, 1549
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	833, 1290, 1395
FokI	GGATG	3 cut(s)	277, 362, 983
Fsp4HI	GCNGC	3 cut(s)	833, 1290, 1395
FspBI	CTAG	5 cut(s)	56, 321, 1110, 1358, 1487
GluI	GCNGC	3 cut(s)	833, 1290, 1395
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	2 cut(s)	101, 1368
HgaI	GACGC	1 cut(s)	995
Hin1I	GRCGYC	1 cut(s)	1006
Hin1II	CATG	3 cut(s)	501, 1465, 1566
HincII	GTYRAC	1 cut(s)	1049
HindII	GTYRAC	1 cut(s)	1049
HinfI	GANTC	4 cut(s)	65, 136, 565, 920
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	4 cut(s)	19, 223, 1049, 1355
Hpy188I	TCNGA	2 cut(s)	617, 1516
Hpy188III	TCNNGA	6 cut(s)	215, 644, 722, 900, 924, 1110
Hpy8I	GTNNAC	4 cut(s)	19, 223, 1049, 1355
Hpy99I	CGWCG	1 cut(s)	992
HpyAV	CCTTC	4 cut(s)	238, 851, 1026, 1415
HpyCH4III	ACNGT	3 cut(s)	38, 467, 1469
HpyCH4IV	ACGT	2 cut(s)	332, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1003, 1012, 1289
HpyF3I	CTNAG	4 cut(s)	614, 1195, 1284, 1513
HpySE526I	ACGT	2 cut(s)	332, 656
Hsp92I	GRCGYC	1 cut(s)	1006
Hsp92II	CATG	3 cut(s)	501, 1465, 1566
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	112, 282, 1424, 1543
LpnPI	CCDG	9 cut(s)	228, 257, 284, 657, 690, 835, 956, 1347, 1449
Lsp1109I	GCAGC	3 cut(s)	819, 1301, 1406
LweI	GCATC	4 cut(s)	40, 291, 961, 1486
MaeI	CTAG	5 cut(s)	56, 321, 1110, 1358, 1487
MaeII	ACGT	2 cut(s)	332, 656
MaeIII	GTNAC	4 cut(s)	442, 1231, 1342, 1382
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	7 cut(s)	745, 836, 843, 862, 1256, 1426, 1501
MfeI	CAATTG	1 cut(s)	1403
MhlI	GDGCHC	1 cut(s)	225
MmeI	TCCRAC	2 cut(s)	408, 632
Mph1103I	ATGCAT	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	4 cut(s)	777, 1149, 1269, 1410
MslI	CAYNNNNRTG	3 cut(s)	945, 1037, 1460
MspCI	CTTAAG	2 cut(s)	1268, 1409
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	1403
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	1003, 1012, 1289
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	501, 1465, 1566
NmuCI	GTSAC	1 cut(s)	1231
NsiI	ATGCAT	1 cut(s)	499
OliI	CACNNNNGTG	2 cut(s)	945, 1037
PaeR7I	CTCGAG	1 cut(s)	900
PaqCI	CACCTGC	1 cut(s)	951
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	4 cut(s)	65, 136, 565, 920
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	834, 1291, 1396
Ppu21I	YACGTR	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	1149
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	268, 1366
PstI	CTGCAG	2 cut(s)	751, 1396
RsaI	GTAC	4 cut(s)	325, 335, 659, 1354
RsaNI	GTAC	4 cut(s)	324, 334, 658, 1353
RseI	CAYNNNNRTG	3 cut(s)	945, 1037, 1460
SaqAI	TTAA	4 cut(s)	777, 1149, 1269, 1410
SatI	GCNGC	3 cut(s)	833, 1290, 1395
Sau3AI	GATC	1 cut(s)	27
Sau96I	GGNCC	2 cut(s)	268, 1366
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	4 cut(s)	40, 291, 961, 1486
SfcI	CTRYAG	3 cut(s)	747, 1392, 1450
Sfr274I	CTCGAG	1 cut(s)	900
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	900
SmiMI	CAYNNNNRTG	3 cut(s)	945, 1037, 1460
SmlI	CTYRAG	4 cut(s)	900, 1035, 1268, 1409
SmoI	CTYRAG	4 cut(s)	900, 1035, 1268, 1409
SpeI	ACTAGT	1 cut(s)	1357
SsiI	CCGC	2 cut(s)	364, 1542
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	5 cut(s)	56, 321, 1110, 1358, 1487
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	38, 467, 1469
TaiI	ACGT	2 cut(s)	335, 659
TaqI	TCGA	4 cut(s)	33, 673, 901, 987
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	4 cut(s)	65, 136, 565, 920
Tru1I	TTAA	4 cut(s)	777, 1149, 1269, 1410
Tru9I	TTAA	4 cut(s)	777, 1149, 1269, 1410
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	1231
TseI	GCWGC	3 cut(s)	832, 1289, 1394
Tsp45I	GTSAC	1 cut(s)	1231
TspDTI	ATGAA	2 cut(s)	204, 638
TspGWI	ACGGA	4 cut(s)	156, 617, 779, 932
TspRI	CASTG	1 cut(s)	75
Vha464I	CTTAAG	2 cut(s)	1268, 1409
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	1149
XapI	RAATTY	1 cut(s)	531
XbaI	TCTAGA	1 cut(s)	1109
XhoI	CTCGAG	1 cut(s)	900
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	5 cut(s)	56, 321, 1110, 1358, 1487
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.