Rh3DG195400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001472
Physical Location & Seq
Forward (+)
17541469 .. 17541984
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG195400.1

Sequence Viewer

Length: 516 bp
ATGGCAGAAAGAGGTGTGGCTCCAAACTCAGTGTGCTTCACTACTCTGATAGACATATATTGCAAGGAAGGAGACTTTGTCGAAGCAAAGCGGGTATTTCAGGAGATGGAAAGCAAAGGAGAGAGGCCTAATAACGTAACATACAATGCTCTAATTGATGGGCATACCAAGAAAGGTAAACTGAAGGAAGCACATAAGATAAAAGAGGAGATGGAAGACAAGGGTTTGATGGCAGATTCGTATACATATTCATCGCTCATACATGGTGAATGTATTGCTGGCAACGTGGATGCGGCACTGACATTGTTTCATGAAATGTCCCAGAGGGGTTTAACTCGAAACGTTGTCACATACACAGTAATTATTTCGGGTTTGTCTAAGGTGGGGAGAAAAGAAGAAGCTTTCAAATTGTACGATGACATGAAAAAAGCAAGCATCATACCTGATGACAGGGTATATAATTCACTTGTACAAGGCCTTTATACAGACAAGTCTAGCTCTATGACAGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

5.65

Isoelectric Point (pI)

20.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 1 - 94 2.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 1 - 53 3.7e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 4 - 37 2.8e-11 PPR repeat
PPR_2 PF13041 8 - 54 6e-17 PPR repeat family
PPR PF01535 11 - 40 3.1e-09 PPR repeat
PPR_1 PF12854 40 - 72 1.2e-09 PPR repeat
PPR_2 PF13041 43 - 91 5.4e-17 PPR repeat family
TPR_24 PF23276 45 - 140 7.4e-07 Fungal tetratrico peptide repeats
PPR PF01535 46 - 76 3.1e-08 PPR repeat
PPR_3 PF13812 66 - 123 2.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 74 - 107 7.8e-10 PPR repeat
PPR PF01535 81 - 111 3.4e-07 PPR repeat
PPR_2 PF13041 85 - 127 1.4e-11 PPR repeat family
PPR_3 PF13812 102 - 157 4.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 109 - 142 6.4e-09 PPR repeat
PPR_2 PF13041 113 - 160 1.7e-15 PPR repeat family
PPR PF01535 116 - 144 9.4e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 242
AciI CCGC 2 cut(s) 91, 293
AclI AACGTT 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 413, 471
AgsI TTSAA 1 cut(s) 406
AluBI AGCT 2 cut(s) 401, 498
AluI AGCT 2 cut(s) 401, 498
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 2 cut(s) 125, 475
AsuHPI GGTGA 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 222
BccI CCATC 4 cut(s) 100, 152, 205, 223
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 495
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 2 cut(s) 280, 444
BpiI GAAGAC 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
BseGI GGATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 221
BshFI GGCC 2 cut(s) 127, 477
BslFI GGGAC 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 2 cut(s) 127, 477
Bsp1407I TGTACA 1 cut(s) 469
BspACI CCGC 2 cut(s) 91, 293
BspANI GGCC 2 cut(s) 127, 477
BspCNI CTCAG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 469
BssNAI GTATAC 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 358
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 280, 433
BstDEI CTNAG 2 cut(s) 28, 378
BstF5I GGATG 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 222
BstZ17I GTATAC 1 cut(s) 243
BsuRI GGCC 2 cut(s) 127, 477
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 36, 296
Cac8I GCNNGC 2 cut(s) 280, 433
CciI TCATGA 1 cut(s) 310
Csp6I GTAC 2 cut(s) 412, 470
CviAII CATG 3 cut(s) 263, 311, 421
CviJI RGCY 5 cut(s) 20, 127, 401, 477, 498
CviKI_1 RGCY 5 cut(s) 20, 127, 401, 477, 498
CviQI GTAC 2 cut(s) 412, 470
DdeI CTNAG 2 cut(s) 28, 378
Eco147I AGGCCT 2 cut(s) 127, 477
Eco57I CTGAAG 1 cut(s) 203
FaeI CATG 3 cut(s) 266, 314, 424
FaqI GGGAC 1 cut(s) 304
FatI CATG 3 cut(s) 262, 310, 420
FauI CCCGC 1 cut(s) 84
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 495
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 127, 477
Hin1II CATG 3 cut(s) 266, 314, 424
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 179, 243
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 2 cut(s) 101, 311
Hpy8I GTNNAC 2 cut(s) 179, 243
HpyAV CCTTC 2 cut(s) 62, 178
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 3 cut(s) 135, 285, 342
HpyCH4V TGCA 1 cut(s) 63
HpyF3I CTNAG 2 cut(s) 28, 378
HpySE526I ACGT 3 cut(s) 135, 285, 342
Hsp92II CATG 3 cut(s) 266, 314, 424
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 5 cut(s) 86, 264, 335, 436, 456
LweI GCATC 2 cut(s) 280, 444
MaeI CTAG 1 cut(s) 495
MaeII ACGT 3 cut(s) 135, 285, 342
MaeIII GTNAC 2 cut(s) 136, 346
MboII GAAGA 2 cut(s) 227, 407
MluCI AATT 4 cut(s) 153, 360, 407, 460
MnlI CCTC 4 cut(s) 5, 117, 199, 318
MseI TTAA 1 cut(s) 332
NlaIII CATG 3 cut(s) 266, 314, 424
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 346
PagI TCATGA 1 cut(s) 310
PceI AGGCCT 2 cut(s) 127, 477
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 295
Psp1406I AACGTT 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 2 cut(s) 413, 471
RsaNI GTAC 2 cut(s) 412, 470
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 294
SetI ASST 9 cut(s) 16, 138, 178, 288, 345, 384, 403, 445, 500
SfaNI GCATC 2 cut(s) 280, 444
Sse9I AATT 4 cut(s) 153, 360, 407, 460
SseBI AGGCCT 2 cut(s) 127, 477
SsiI CCGC 2 cut(s) 91, 293
SspMI CTAG 1 cut(s) 495
StuI AGGCCT 2 cut(s) 127, 477
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 3 cut(s) 138, 288, 345
TaqI TCGA 2 cut(s) 81, 337
TasI AATT 4 cut(s) 153, 360, 407, 460
TatI WGTACW 1 cut(s) 469
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 36, 303
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 240, 299, 327, 437
TspRI CASTG 2 cut(s) 36, 303
Tth111I GACNNNGTC 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.