Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

13592206 .. 13593363

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G167000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGACGACGAAAATTATGGCGAAAAGAGCTCCAGGGCTCACGCTTCTCCAAAAGGGTAATCCTTCTTCTCGCTATTCTCTGTACGGGCTCGTCTTTTTCAGAAGCCAGTTTTGCTCTTTCGCTGTCAATCGTTGTCCTACTGTTAGTGTTAAGGAAACCATTGATTTGGAGGATTTGGTAAAAACGCGTTGTAAATCTGGTAATCTTGGGTTAGATGAAGCACTGGGTCACTTCGATTCCGTAATTCAAATGAAACCCATTCCCTCGATTTGGGCTATTAATCATTTGTTTGGGGCACTCTCGAAGATGAATCAGTGTTCCACTGTAGTTTCTATGTATAAACAGATGCTGGCTTGTGTTGGCTTACACCCGGAAGTCCATACACTGAGTGTTGTTATCAATTGCTTGTGCCGTATGAATCGGGTGGACTTGGGTTTCTCTGTTTTAGCAACTATCCTTAAACATGGTCTTCAGCCCAATGCTTATACTTTGAATGCTTTGCTTCATGGGGTTTGCAAGTATAGGTCGCTCTCTGAGGCAATGGAGTTACTCCAGAAAATAGAAGAGAAAGGATTAGCATGCTGTGAAATGACTTACGCTACTATAATTAATGGGTTGTGCAGAGCTGGGAAAACATGTATGGCGCTTGAGATACTCGAGCAAATGTATGAAGATGGAAGGTTTAAGCCTGACCCTCAATGCTATAATCCAATCATTGACCGCTTATGCAAAGAAAGAAGAACAGATGAGGCGCTGACCCTATTTCGAGATATGATCAACAAAAATGTTGCGCCGGATATCGTCAGTTACACTTCATTAATTTATGGATTATGCAACATGGGTCTTTGGACACGAGCACTTGCTCTGTTTGAAATGATGAATAAGAAAGGCAGAAAGCCTGATGTTGTCACTTTTAATTCCATAATTTCTGCAGCATGCAAGTCTGGTAAGTGGGAAGAAGCTGTGCGTCTATTTAGAAACATGATTGATTGTGGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

334

Amino Acids

37.31

Weight (kDa)

8.84

Isoelectric Point (pI)

32.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	995
AccII	CGCG	1 cut(s)	187
AciI	CCGC	1 cut(s)	721
AcuI	CTGAAG	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	996
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	270
AflIII	ACRYGT	2 cut(s)	185, 635
AgsI	TTSAA	3 cut(s)	248, 493, 872
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	29, 626, 962
AluI	AGCT	3 cut(s)	29, 626, 962
Alw21I	GWGCWC	2 cut(s)	31, 859
AlwNI	CAGNNNCTG	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	932
AseI	ATTAAT	3 cut(s)	279, 609, 818
AspLEI	GCGC	4 cut(s)	646, 754, 793, 998
AsuC2I	CCSGG	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	995
BanII	GRGCYC	3 cut(s)	31, 39, 90
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BauI	CACGAG	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	2 cut(s)	31, 859
BbvI	GCAGC	1 cut(s)	944
BccI	CCATC	1 cut(s)	668
BceAI	ACGGC	1 cut(s)	396
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	774
BcnI	CCSGG	1 cut(s)	371
BfmI	CTRYAG	2 cut(s)	324, 930
BfoI	RGCGCY	3 cut(s)	647, 755, 999
BisI	GCNGC	1 cut(s)	933
BlsI	GCNGC	1 cut(s)	934
Bme1390I	CCNGG	2 cut(s)	33, 371
BmeT110I	CYCGRG	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	997
BmrFI	CCNGG	2 cut(s)	33, 371
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	2 cut(s)	15, 536
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	996
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	106, 228
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	377, 525
BseNI	ACTGG	2 cut(s)	106, 228
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	944
BseYI	CCCAGC	1 cut(s)	626
BsgI	GTGCAG	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	995
BsiHKAI	GWGCWC	2 cut(s)	31, 859
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	371, 794
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	499
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	5 cut(s)	31, 39, 90, 298, 859
Bsp143I	GATC	1 cut(s)	774
BspACI	CCGC	1 cut(s)	721
BspCNI	CTCAG	2 cut(s)	378, 526
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	997
BspMAI	CTGCAG	1 cut(s)	934
BspT107I	GGYRCC	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	106, 228
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	774
BssNI	GRCGYC	1 cut(s)	996
BssSI	CACGAG	1 cut(s)	852
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	142, 325
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	996
BstC8I	GCNNGC	3 cut(s)	351, 580, 937
BstDEI	CTNAG	2 cut(s)	386, 534
BstFNI	CGCG	1 cut(s)	187
BstH2I	RGCGCY	3 cut(s)	647, 755, 999
BstHHI	GCGC	4 cut(s)	646, 754, 793, 998
BstKTI	GATC	1 cut(s)	777
BstMBI	GATC	1 cut(s)	774
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 111
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	3 cut(s)	582, 639, 939
BstSCI	CCNGG	2 cut(s)	31, 369
BstSFI	CTRYAG	2 cut(s)	324, 930
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	944
BstV2I	GAAGAC	1 cut(s)	461
BstXI	CCANNNNNNTGG	1 cut(s)	166
BtsIMutI	CAGTG	4 cut(s)	221, 320, 321, 383
Cac8I	GCNNGC	3 cut(s)	351, 580, 937
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	4 cut(s)	646, 754, 793, 998
CseI	GACGC	1 cut(s)	956
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	7 cut(s)	464, 506, 579, 636, 838, 936, 982
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	2 cut(s)	386, 534
DinI	GGCGCC	1 cut(s)	997
DpnI	GATC	1 cut(s)	776
DpnII	GATC	1 cut(s)	774
DraIII	CACNNNGTG	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	3 cut(s)	31, 39, 90
Eco32I	GATATC	1 cut(s)	799
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	799
EcoT38I	GRGCYC	3 cut(s)	31, 39, 90
EgeI	GGCGCC	1 cut(s)	997
EheI	GGCGCC	1 cut(s)	997
FaeI	CATG	7 cut(s)	467, 509, 582, 639, 841, 939, 985
FatI	CATG	7 cut(s)	463, 505, 578, 635, 837, 935, 981
FbaI	TGATCA	1 cut(s)	774
Fnu4HI	GCNGC	1 cut(s)	933
FriOI	GRGCYC	3 cut(s)	31, 39, 90
Fsp4HI	GCNGC	1 cut(s)	933
GlaI	GCGC	4 cut(s)	645, 753, 792, 997
GluI	GCNGC	1 cut(s)	933
GsaI	CCCAGC	1 cut(s)	630
GsuI	CTGGAG	2 cut(s)	15, 536
HaeII	RGCGCY	3 cut(s)	647, 755, 999
HapII	CCGG	2 cut(s)	371, 794
HgaI	GACGC	1 cut(s)	956
HhaI	GCGC	4 cut(s)	646, 754, 793, 998
Hin1I	GRCGYC	1 cut(s)	996
Hin1II	CATG	7 cut(s)	467, 509, 582, 639, 841, 939, 985
Hin6I	GCGC	4 cut(s)	644, 752, 791, 996
HinP1I	GCGC	4 cut(s)	644, 752, 791, 996
HinfI	GANTC	3 cut(s)	236, 310, 418
HpaII	CCGG	2 cut(s)	371, 794
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	2 cut(s)	101, 535
Hpy188III	TCNNGA	3 cut(s)	301, 553, 767
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	72, 672
HpyCH4III	ACNGT	2 cut(s)	142, 325
HpyCH4V	TGCA	6 cut(s)	516, 621, 729, 834, 932, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 111
HpyF3I	CTNAG	2 cut(s)	386, 534
Hsp92I	GRCGYC	1 cut(s)	996
Hsp92II	CATG	7 cut(s)	467, 509, 582, 639, 841, 939, 985
HspAI	GCGC	4 cut(s)	644, 752, 791, 996
KasI	GGCGCC	1 cut(s)	995
Ksp22I	TGATCA	1 cut(s)	774
Kzo9I	GATC	1 cut(s)	774
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	944
LweI	GCATC	1 cut(s)	336
MaeIII	GTNAC	4 cut(s)	227, 546, 806, 907
MalI	GATC	1 cut(s)	776
MboI	GATC	1 cut(s)	774
MboII	GAAGA	7 cut(s)	57, 316, 461, 575, 683, 750, 968
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	5 cut(s)	31, 39, 90, 298, 859
MluCI	AATT	7 cut(s)	12, 243, 400, 606, 819, 916, 924
MluI	ACGCGT	1 cut(s)	185
Mly113I	GGCGCC	1 cut(s)	996
MnlI	CCTC	5 cut(s)	163, 274, 529, 705, 742
MseI	TTAA	7 cut(s)	150, 279, 459, 609, 684, 818, 915
MspI	CCGG	2 cut(s)	371, 794
MspR9I	CCNGG	2 cut(s)	33, 371
MunI	CAATTG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	26, 111
NarI	GGCGCC	1 cut(s)	996
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	1 cut(s)	774
NlaIII	CATG	7 cut(s)	467, 509, 582, 639, 841, 939, 985
NlaIV	GGNNCC	1 cut(s)	997
NmuCI	GTSAC	2 cut(s)	227, 907
NspI	RCATGY	3 cut(s)	582, 639, 939
PaeI	GCATGC	2 cut(s)	582, 939
PaeR7I	CTCGAG	1 cut(s)	656
PciI	ACATGT	1 cut(s)	635
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	236, 310, 418
PkrI	GCNGC	1 cut(s)	934
PluTI	GGCGCC	1 cut(s)	999
PscI	ACATGT	1 cut(s)	635
PshBI	ATTAAT	3 cut(s)	279, 609, 818
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	997
PspXI	VCTCGAGB	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	934
PstNI	CAGNNNCTG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	7 cut(s)	150, 279, 459, 609, 684, 818, 915
SatI	GCNGC	1 cut(s)	933
Sau3AI	GATC	1 cut(s)	774
ScrFI	CCNGG	2 cut(s)	33, 371
SduI	GDGCHC	5 cut(s)	31, 39, 90, 298, 859
SetI	ASST	5 cut(s)	31, 527, 628, 683, 964
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	2 cut(s)	324, 930
SfoI	GGCGCC	1 cut(s)	997
Sfr274I	CTCGAG	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	647, 656
SmoI	CTYRAG	2 cut(s)	647, 656
SphI	GCATGC	2 cut(s)	582, 939
Sse9I	AATT	7 cut(s)	12, 243, 400, 606, 819, 916, 924
SsiI	CCGC	1 cut(s)	721
SspDI	GGCGCC	1 cut(s)	995
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	31, 369
TaaI	ACNGT	2 cut(s)	142, 325
TaqI	TCGA	5 cut(s)	234, 266, 302, 657, 766
TasI	AATT	7 cut(s)	12, 243, 400, 606, 819, 916, 924
TfiI	GAWTC	3 cut(s)	236, 310, 418
Tru1I	TTAA	7 cut(s)	150, 279, 459, 609, 684, 818, 915
Tru9I	TTAA	7 cut(s)	150, 279, 459, 609, 684, 818, 915
TscAI	CASTG	4 cut(s)	228, 320, 328, 390
TseFI	GTSAC	2 cut(s)	227, 907
TseI	GCWGC	1 cut(s)	932
Tsp45I	GTSAC	2 cut(s)	227, 907
TspDTI	ATGAA	8 cut(s)	231, 266, 323, 431, 494, 684, 804, 893
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	4 cut(s)	228, 320, 328, 390
VspI	ATTAAT	3 cut(s)	279, 609, 818
XceI	RCATGY	3 cut(s)	582, 639, 939
XhoI	CTCGAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.