Rroxscaffold_5G00358070

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001472
Physical Location & Seq
Reverse (-)
38043992 .. 38048913
4922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358070.1

Sequence Viewer

Length: 2379 bp
ATGAAACCCATTTGCGCCTTCAGTTGTTTGTTTGGGGCACCATCCAAGATGAAGCAATATTCCACTGTTTTTTCTGTGTGCAAGCAGATGATGAGTAATGCTTTGGAAGACACGGTAGAAAAACGTTGCGAATCTGGTGGTGTTGGATTAGATGAAGCCGTAGATTACTTCAATTCCATGGTTAAAATGAAACCCATTCCCTCCGCTAAGGCTTTTAATGGTTTGTTAGGGGCAGTGTACAAGTTGAAGCAGTATTCCACTGTGGTTTCTAACTTTCTATCGGATTTGGGTCTCTCTGCTTTAGTAATTGCTCTTAAACATGGTTTTCAGCCTGAGGCTTATTCTCTGAATCTTTTGGTTCGTGGGCTTTGCAAGAACAGCTCTCTGGTTGCAGCAGTGGACCTGTTCTGGAAAATGGAACACCACGAATGGGATAAATTCACTTATGGTATTATAATTAATGAGTTATGCAAAGCTGGGAAGGGTACTGATGGGATGGAGATACTTGAGCACATGTATGGAAATGGGAGGTTTAAGCCCGGCCTAGATTGTTACAATCCAATCATTGACAGCCTTTGTAAAGAAAGACGGCTAGATGAGGCTTTGACCCTGTTACAGGATATGATCAACAGAAGTGTTGTACCAAATGCCATCACTTACAAATCATTGTTTCATGGATTATGCAATGTGGGTTATTGGGATAAAGTACTCGCTCTGTTCGAAACAATGAAGGATCAAGGAACCGCCCCTAATGTTGCCACCTTCAACACCCTAATACATGCACTTTGCCAGTCAGGGAAGAAAGAATACAAAGAAGCAGTTTCTGTGTTAGAAAAGATGACTAGCAAAGGCATAAAGCCTACTGTTGTCACTTTTAACTCCTTAATTTCTGCTTCATGCAAGTCTGGTCAATGGGAAAAAGCTGTACAGTTATTTAAAAAGGGGAAGACATCAGAGGCACTTAATCTTTTCGAAGAAATGATCCATAGAGGTGTAAAGCCTAATCTTTTCACCTACAACTCCTTAATTCATGGATTATGCCTTTCTAGCAAGTGGAGAGAGGCAACAAGCTTGCTTGATGGAATGATGGATGAAGGAGTCTCACCAGATATTGTAACCTTAACCTCTGTAATAGATGCTCTTTTCAAGGAGAGAAGGACCCAGGACGCCCTCACTGTTTTACAGCTAATGACTCAAAGAGATGCTCTTTGCAAGGATAGACGGACCAAGGACGCACTCACTGTTTTACAGCTAATGACTCAAAGAGGTCCAAGTCCTGATGTGATCACTTACAACTGTCTAGTTCGTGGATTGTGCCGTTCTGGCCAGTGGAGAGAAGCAACAGGCTTGCTTAATAGACTGATGGATGAAGGAGTCCCACCAAATGTTGTAACCTTCAACTCTTTAATAGATGCTCTTTGCAAGGAGAGAAGGACCAAGGACGCCCTCACTGTTTTACAGCTAATGGCTGAAAAAGGTCCAAGTCCTGACGTTATCACTTACAACTGTCTTATTTATGGCATGTGCAATACATCACAATGGGGTGAAGCCACAAGGTTGTATGATGAAATGGTTGGTCTGGGCATCTTACCTAATATGATAACTTTGACAACACTTTTCGATACTCTCTGCAAAGAAGGGTTGACAGAGGACGCTCGCAAAGCAGTTGAGGCAACATTTCAATATGGTATGGAGGTTAGCAAGATCACATTCAACATGCTGCTTCATGATTATTGTTTGCGTGGAAAAAGTGACAAGGCAGAGAAGGTCATTAGTTTTATGGTGTTGAAGGGTCATGTTCCTGATATTGCTTCCTGTACAACCTTGGACAATAACTTTGTGCAAACCAACCCGAGGAAAGGGAAACGTAAAATTATTGGTTCCCCTCCTCTATTTCTCATTCGTTATAACTTTCAAGCTTATGATGAAGGCTTGTTAAACAGTCTGCAATGTGTATTTAATAGCTGTGATGTTCTTAAACATTATGTTGCCCATATAGACGACATATTTAAGAACTTCACTTCTTACAAGGTTAACGTTCCTGTAGCTGGAGCGATCATTTTGGATGAAACCTATGAAAGGATCTTGTTATGTGTTGTGGTGAACATGCATGCTTGTGATGGTATGGAAAGGATCAAGCTGGAGTTTTCTCGTGGCAAAATGAACAAAGATGAAGAAGACCATGCATGTGCCATCAGAGAACCAGGGACTAATGAAATTGAATACATCGTAAATGATATTTTTAGCACTTTAAATCTGCATAATGTGCACAAATTTATATGTGAGATAATAGTGTGCTATTATGAGGTGGTTTACCTGATTCATGAGAAGCATGCGAAACAGGTGGGGTGTGTAAAGGAGAAAATTGAAGGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

792

Amino Acids

88.9

Weight (kDa)

7.19

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 113 - 158 7e-06 PPR repeat family
PPR_1 PF12854 179 - 208 1.9e-06 PPR repeat
PPR_2 PF13041 184 - 229 7.9e-14 PPR repeat family
TPR_24 PF23276 185 - 267 4e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 204 - 262 1.3e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 219 - 314 2.6e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 223 - 264 2e-11 PPR repeat family
PPR_long PF17177 234 - 310 1.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 249 - 281 3.4e-07 PPR repeat
PPR_2 PF13041 255 - 301 5.2e-12 PPR repeat family
PPR_3 PF13812 257 - 298 8.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 283 - 314 2.8e-10 PPR repeat
PPR_2 PF13041 287 - 313 2.6e-06 PPR repeat family
PPR PF01535 290 - 314 3.9e-06 PPR repeat
PPR_2 PF13041 311 - 347 2.6e-12 PPR repeat family
PPR_1 PF12854 330 - 362 6.6e-10 PPR repeat
PPR PF01535 337 - 367 7.4e-06 PPR repeat
PPR_2 PF13041 337 - 383 1.1e-10 PPR repeat family
PPR_2 PF13041 401 - 440 8.3e-09 PPR repeat family
TPR_24 PF23276 412 - 523 2.2e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 422 - 453 1.6e-09 PPR repeat
PPR_2 PF13041 426 - 475 1.4e-16 PPR repeat family
PPR PF01535 429 - 459 4.4e-06 PPR repeat
PPR_3 PF13812 451 - 505 2.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 458 - 489 5.3e-10 PPR repeat
PPR_2 PF13041 461 - 510 1.1e-15 PPR repeat family
PPR PF01535 464 - 493 5.2e-06 PPR repeat
PPR_1 PF12854 492 - 525 2.2e-08 PPR repeat
PPR_2 PF13041 496 - 545 6.5e-15 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 455, 1908
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 2 cut(s) 204, 744
AclI AACGTT 2 cut(s) 124, 2037
AclWI GGATC 4 cut(s) 741, 976, 2090, 2141
AcoI YGGCCR 1 cut(s) 1324
AcsI RAATTY 2 cut(s) 437, 2273
AcuI CTGAAG 1 cut(s) 4
AcyI GRCGYC 2 cut(s) 1167, 1443
AfaI GTAC 6 cut(s) 239, 487, 642, 708, 927, 1819
AfiI CCNNNNNNNGG 6 cut(s) 430, 616, 1854, 1859, 2048, 2079
AflIII ACRYGT 1 cut(s) 513
AjnI CCWGG 2 cut(s) 1161, 2203
Alw21I GWGCWC 2 cut(s) 513, 2271
Alw26I GTCTC 2 cut(s) 296, 1105
Alw44I GTGCAC 1 cut(s) 2267
AlwI GGATC 4 cut(s) 741, 976, 2090, 2141
AlwNI CAGNNNCTG 1 cut(s) 824
Ama87I CYCGRG 1 cut(s) 1852
AoxI GGCC 2 cut(s) 541, 1324
ApaLI GTGCAC 1 cut(s) 2267
ApeKI GCWGC 2 cut(s) 392, 1720
ApoI RAATTY 2 cut(s) 437, 2273
ArsI GACNNNNNNTTYG 2 cut(s) 1820, 1852
AseI ATTAAT 1 cut(s) 459
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 4 cut(s) 1003, 1095, 1556, 2113
AsuII TTCGAA 2 cut(s) 720, 972
AvaI CYCGRG 1 cut(s) 1852
AvaII GGWCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
AxyI CCTNAGG 1 cut(s) 333
BaeGI GKGCMC 2 cut(s) 40, 2271
BalI TGGCCA 1 cut(s) 1326
BanI GGYRCC 1 cut(s) 37
BarI GAAGNNNNNNTAC 2 cut(s) 791, 823
BauI CACGAG 1 cut(s) 2151
BbsI GAAGAC 3 cut(s) 114, 953, 2184
Bbv12I GWGCWC 2 cut(s) 513, 2271
BbvI GCAGC 2 cut(s) 404, 1707
BccI CCATC 9 cut(s) 49, 485, 490, 659, 1073, 1081, 1357, 2114, 2201
BceAI ACGGC 3 cut(s) 143, 605, 1302
BciT130I CCWGG 2 cut(s) 1163, 2205
BclI TGATCA 2 cut(s) 624, 1284
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 2 cut(s) 296, 1105
BfaI CTAG 5 cut(s) 545, 593, 843, 1047, 1301
BfmI CTRYAG 1 cut(s) 2043
BglI GCCNNNNNGGC 1 cut(s) 1323
BisI GCNGC 2 cut(s) 393, 1721
BlsI GCNGC 2 cut(s) 394, 1722
BmcAI AGTACT 1 cut(s) 708
Bme1390I CCNGG 3 cut(s) 540, 1163, 2205
Bme18I GGWCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
BmeT110I CYCGRG 1 cut(s) 1852
BmgT120I GGNCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
BmiI GGNNCC 4 cut(s) 39, 742, 1160, 1882
BmrFI CCNGG 3 cut(s) 540, 1163, 2205
BmsI GCATC 4 cut(s) 1126, 1192, 1402, 1593
BpiI GAAGAC 3 cut(s) 114, 953, 2184
BpmI CTGGAG 2 cut(s) 2070, 2162
Bpu10I CCTNAGC 1 cut(s) 207
Bpu14I TTCGAA 2 cut(s) 720, 972
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 540
BsaHI GRCGYC 2 cut(s) 1167, 1443
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 7 cut(s) 177, 1161, 1227, 1437, 1824, 1853, 2204
Bsc4I CCNNNNNNNGG 6 cut(s) 430, 616, 1854, 1859, 2048, 2079
Bse1I ACTGG 2 cut(s) 790, 1327
Bse21I CCTNAGG 1 cut(s) 333
Bse3DI GCAATG 2 cut(s) 691, 1955
BseBI CCWGG 2 cut(s) 1163, 2205
BseDI CCNNGG 7 cut(s) 177, 1161, 1227, 1437, 1824, 1853, 2204
BseGI GGATG 5 cut(s) 41, 501, 1096, 1372, 2071
BseLI CCNNNNNNNGG 6 cut(s) 430, 616, 1854, 1859, 2048, 2079
BseMI GCAATG 2 cut(s) 691, 1955
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 790, 1327
BseRI GAGGAG 1 cut(s) 1878
BseSI GKGCMC 2 cut(s) 40, 2271
BseXI GCAGC 2 cut(s) 404, 1707
BseYI CCCAGC 1 cut(s) 476
BshFI GGCC 2 cut(s) 543, 1326
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 513, 2271
BsiHKCI CYCGRG 1 cut(s) 1852
BsiSI CCGG 1 cut(s) 540
BslFI GGGAC 2 cut(s) 1361, 2221
BslI CCNNNNNNNGG 6 cut(s) 430, 616, 1854, 1859, 2048, 2079
BsmAI GTCTC 2 cut(s) 296, 1105
BsmFI GGGAC 2 cut(s) 1361, 2221
BsnI GGCC 2 cut(s) 543, 1326
Bso31I GGTCTC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 1852
Bsp119I TTCGAA 2 cut(s) 720, 972
Bsp1286I GDGCHC 3 cut(s) 40, 513, 2271
Bsp1407I TGTACA 3 cut(s) 237, 925, 1817
Bsp143I GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 204, 744
BspANI GGCC 2 cut(s) 543, 1326
BspCNI CTCAG 1 cut(s) 325
BspHI TCATGA 2 cut(s) 1726, 2323
BspLI GGNNCC 4 cut(s) 39, 742, 1160, 1882
BspPI GGATC 4 cut(s) 741, 976, 2090, 2141
BspT104I TTCGAA 2 cut(s) 720, 972
BspT107I GGYRCC 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 691, 1955
BsrGI TGTACA 3 cut(s) 237, 925, 1817
BsrI ACTGG 2 cut(s) 790, 1327
BssECI CCNNGG 7 cut(s) 177, 1161, 1227, 1437, 1824, 1853, 2204
BssMI GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
BssNI GRCGYC 2 cut(s) 1167, 1443
BssSI CACGAG 1 cut(s) 2151
BssT1I CCWWGG 4 cut(s) 177, 1227, 1437, 1824
Bst2BI CACGAG 1 cut(s) 2151
Bst2UI CCWGG 2 cut(s) 1163, 2205
BstACI GRCGYC 2 cut(s) 1167, 1443
BstAPI GCANNNNNTGC 1 cut(s) 2266
BstAUI TGTACA 3 cut(s) 237, 925, 1817
BstBI TTCGAA 2 cut(s) 720, 972
BstC8I GCNNGC 6 cut(s) 83, 1073, 1349, 1657, 2112, 2334
BstDEI CTNAG 2 cut(s) 207, 333
BstDSI CCRYGG 1 cut(s) 177
BstENI CCTNNNNNAGG 2 cut(s) 614, 2077
BstF5I GGATG 5 cut(s) 41, 501, 1096, 1372, 2071
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 8 cut(s) 627, 736, 984, 1287, 1707, 2058, 2085, 2136
BstMAI GTCTC 2 cut(s) 296, 1105
BstMBI GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
BstMWI GCNNNNNNNGC 6 cut(s) 378, 1047, 1323, 1661, 1670, 2266
BstNI CCWGG 2 cut(s) 1163, 2205
BstNSI RCATGY 8 cut(s) 517, 782, 1525, 1720, 2110, 2114, 2190, 2336
BstSCI CCNGG 3 cut(s) 538, 1161, 2203
BstSFI CTRYAG 1 cut(s) 2043
BstSLI GKGCMC 2 cut(s) 40, 2271
BstV1I GCAGC 2 cut(s) 404, 1707
BstV2I GAAGAC 3 cut(s) 114, 953, 2184
BstX2I RGATCY 1 cut(s) 2082
BstYI RGATCY 1 cut(s) 2082
Bsu36I CCTNAGG 1 cut(s) 333
BsuRI GGCC 2 cut(s) 543, 1326
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 5 cut(s) 41, 501, 1096, 1372, 2071
BtsI GCAGTG 2 cut(s) 240, 402
BtsIMutI CAGTG 8 cut(s) 63, 240, 258, 402, 1173, 1239, 1334, 1449
Cac8I GCNNGC 6 cut(s) 83, 1073, 1349, 1657, 2112, 2334
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 2 cut(s) 1726, 2323
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
CseI GACGC 4 cut(s) 1175, 1241, 1451, 1661
Csp6I GTAC 6 cut(s) 238, 486, 641, 707, 926, 1818
CviQI GTAC 6 cut(s) 238, 486, 641, 707, 926, 1818
DdeI CTNAG 2 cut(s) 207, 333
DpnI GATC 8 cut(s) 626, 735, 983, 1286, 1706, 2057, 2084, 2135
DpnII GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
DraI TTTAAA 2 cut(s) 937, 2253
EaeI YGGCCR 1 cut(s) 1324
Eco130I CCWWGG 4 cut(s) 177, 1227, 1437, 1824
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
Eco57I CTGAAG 1 cut(s) 4
Eco81I CCTNAGG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 1852
EcoNI CCTNNNNNAGG 2 cut(s) 614, 2077
EcoO109I RGGNCCY 1 cut(s) 1158
EcoRII CCWGG 2 cut(s) 1161, 2203
EcoT14I CCWWGG 4 cut(s) 177, 1227, 1437, 1824
EcoT22I ATGCAT 2 cut(s) 2112, 2188
ErhI CCWWGG 4 cut(s) 177, 1227, 1437, 1824
FaqI GGGAC 2 cut(s) 1361, 2221
FbaI TGATCA 2 cut(s) 624, 1284
Fnu4HI GCNGC 2 cut(s) 393, 1721
FokI GGATG 5 cut(s) 28, 508, 1103, 1379, 2078
Fsp4HI GCNGC 2 cut(s) 393, 1721
FspBI CTAG 5 cut(s) 545, 593, 843, 1047, 1301
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 393, 1721
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 2 cut(s) 2070, 2162
HaeIII GGCC 2 cut(s) 543, 1326
HapII CCGG 1 cut(s) 540
HgaI GACGC 4 cut(s) 1175, 1241, 1451, 1661
HhaI GCGC 1 cut(s) 17
Hin1I GRCGYC 2 cut(s) 1167, 1443
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 2 cut(s) 1644, 2035
HindII GTYRAC 2 cut(s) 1644, 2035
HindIII AAGCTT 2 cut(s) 1069, 1917
HinfI GANTC 7 cut(s) 131, 349, 1098, 1192, 1258, 1374, 2320
HpaI GTTAAC 1 cut(s) 2035
HpaII CCGG 1 cut(s) 540
HphI GGTGA 4 cut(s) 1003, 1095, 1556, 2113
Hpy166II GTNNAC 7 cut(s) 238, 400, 1644, 2035, 2104, 2269, 2314
Hpy188I TCNGA 4 cut(s) 283, 348, 955, 2198
Hpy188III TCNNGA 6 cut(s) 409, 1277, 1487, 1727, 1802, 2324
Hpy8I GTNNAC 7 cut(s) 238, 400, 1644, 2035, 2104, 2269, 2314
HpyCH4IV ACGT 4 cut(s) 124, 1491, 1867, 2037
HpyF10VI GCNNNNNNNGC 6 cut(s) 378, 1047, 1323, 1661, 1670, 2266
HpyF3I CTNAG 2 cut(s) 207, 333
HpySE526I ACGT 4 cut(s) 124, 1491, 1867, 2037
Hsp92I GRCGYC 2 cut(s) 1167, 1443
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 2 cut(s) 624, 1284
KspAI GTTAAC 1 cut(s) 2035
Kzo9I GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
LmnI GCTCC 1 cut(s) 2051
Lsp1109I GCAGC 2 cut(s) 404, 1707
LweI GCATC 4 cut(s) 1126, 1192, 1402, 1593
MaeI CTAG 5 cut(s) 545, 593, 843, 1047, 1301
MaeII ACGT 4 cut(s) 124, 1491, 1867, 2037
MaeIII GTNAC 6 cut(s) 551, 612, 868, 1114, 1390, 1751
MalI GATC 8 cut(s) 626, 735, 983, 1286, 1706, 2057, 2084, 2135
MboI GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
MboII GAAGA 6 cut(s) 119, 811, 958, 986, 2186, 2189
MflI RGATCY 1 cut(s) 2082
MhlI GDGCHC 3 cut(s) 40, 513, 2271
MlsI TGGCCA 1 cut(s) 1326
MluNI TGGCCA 1 cut(s) 1326
MlyI GAGTC 4 cut(s) 1107, 1186, 1252, 1383
MmeI TCCRAC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 1326
Mph1103I ATGCAT 2 cut(s) 2112, 2188
MscI TGGCCA 1 cut(s) 1326
MslI CAYNNNNRTG 5 cut(s) 516, 990, 1537, 2115, 2187
Msp20I TGGCCA 1 cut(s) 1326
MspI CCGG 1 cut(s) 540
MspR9I CCNGG 3 cut(s) 540, 1163, 2205
MvaI CCWGG 2 cut(s) 1163, 2205
MwoI GCNNNNNNNGC 6 cut(s) 378, 1047, 1323, 1661, 1670, 2266
NciI CCSGG 1 cut(s) 540
NcoI CCATGG 1 cut(s) 177
NdeII GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
NlaIV GGNNCC 4 cut(s) 39, 742, 1160, 1882
NmuCI GTSAC 2 cut(s) 868, 1751
NsiI ATGCAT 2 cut(s) 2112, 2188
NspI RCATGY 8 cut(s) 517, 782, 1525, 1720, 2110, 2114, 2190, 2336
NspV TTCGAA 2 cut(s) 720, 972
PaeI GCATGC 2 cut(s) 2114, 2336
PagI TCATGA 2 cut(s) 1726, 2323
PciI ACATGT 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 717
PfeI GAWTC 3 cut(s) 131, 349, 2320
PkrI GCNGC 2 cut(s) 394, 1722
PleI GAGTC 4 cut(s) 1106, 1186, 1252, 1382
PpsI GAGTC 4 cut(s) 1106, 1186, 1252, 1382
PpuMI RGGWCCY 1 cut(s) 1158
PscI ACATGT 1 cut(s) 513
PshBI ATTAAT 1 cut(s) 459
PsiI TTATAA 2 cut(s) 455, 1908
Psp1406I AACGTT 2 cut(s) 124, 2037
Psp5II RGGWCCY 1 cut(s) 1158
Psp6I CCWGG 2 cut(s) 1161, 2203
PspFI CCCAGC 1 cut(s) 476
PspGI CCWGG 2 cut(s) 1161, 2203
PspN4I GGNNCC 4 cut(s) 39, 742, 1160, 1882
PspPI GGNCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
PspPPI RGGWCCY 1 cut(s) 1158
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 2082
RsaI GTAC 6 cut(s) 239, 487, 642, 708, 927, 1819
RsaNI GTAC 6 cut(s) 238, 486, 641, 707, 926, 1818
RseI CAYNNNNRTG 5 cut(s) 516, 990, 1537, 2115, 2187
SatI GCNGC 2 cut(s) 393, 1721
Sau3AI GATC 8 cut(s) 624, 733, 981, 1284, 1704, 2055, 2082, 2133
Sau96I GGNCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
ScaI AGTACT 1 cut(s) 708
SchI GAGTC 4 cut(s) 1107, 1186, 1252, 1383
ScrFI CCNGG 3 cut(s) 540, 1163, 2205
SduI GDGCHC 3 cut(s) 40, 513, 2271
SfaNI GCATC 4 cut(s) 1126, 1192, 1402, 1593
SfcI CTRYAG 1 cut(s) 2043
SfuI TTCGAA 2 cut(s) 720, 972
SinI GGWCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
SmiMI CAYNNNNRTG 5 cut(s) 516, 990, 1537, 2115, 2187
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SphI GCATGC 2 cut(s) 2114, 2336
SsiI CCGC 2 cut(s) 204, 744
SspI AATATT 1 cut(s) 59
SspMI CTAG 5 cut(s) 545, 593, 843, 1047, 1301
StyD4I CCNGG 3 cut(s) 538, 1161, 2203
StyI CCWWGG 4 cut(s) 177, 1227, 1437, 1824
TaiI ACGT 4 cut(s) 127, 1494, 1870, 2040
TaqI TCGA 3 cut(s) 720, 972, 1620
TatI WGTACW 4 cut(s) 237, 706, 925, 1817
TfiI GAWTC 3 cut(s) 131, 349, 2320
TscAI CASTG 8 cut(s) 70, 240, 265, 402, 1180, 1246, 1334, 1456
TseFI GTSAC 2 cut(s) 868, 1751
TseI GCWGC 2 cut(s) 392, 1720
Tsp45I GTSAC 2 cut(s) 868, 1751
TspGWI ACGGA 1 cut(s) 1237
TspRI CASTG 8 cut(s) 70, 240, 265, 402, 1180, 1246, 1334, 1456
VneI GTGCAC 1 cut(s) 2267
VpaK11BI GGWCC 6 cut(s) 400, 1158, 1224, 1268, 1434, 1478
VspI ATTAAT 1 cut(s) 459
XagI CCTNNNNNAGG 2 cut(s) 614, 2077
XapI RAATTY 2 cut(s) 437, 2273
XceI RCATGY 8 cut(s) 517, 782, 1525, 1720, 2110, 2114, 2190, 2336
XspI CTAG 5 cut(s) 545, 593, 843, 1047, 1301
ZrmI AGTACT 1 cut(s) 708
Zsp2I ATGCAT 2 cut(s) 2112, 2188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.