Rh4BG183800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001472
Physical Location & Seq
Reverse (-)
32209166 .. 32216335
7170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG183800.1

Sequence Viewer

Length: 768 bp
ATGTGCAAGCAGATGATGAGTAATGCTTTGGAAGACACGGTAGAAAAACGTTGTGAATCTGGCGGTTTTGGATTAGATGAAGCCTTAGATTACTTCAATTCCATGGTTAAAATGAAACCCATTCCCTCCCCTAAGGCTTTTAATGGTTTGTTAGGGGCAGTGTCCAAGTTGAAGCAGTATTCCACTGTGGTTTCTATGTATAAACACTTGATGGGTATTGCTCACTTCCAACCTGATTATCGTACAATGAATGTTGTCATTAATTGCTTGTGTCGTCTGAATCAGGCCGACTTGGGTCTCTCTGCTTTAGCAATTTCCCTTAAACATGGTTTTCAGCCTGAGGCTTATTCTCTGAATCTTTTGGTTCGTGGGCTTTGCAAGAACAGCTCTCTGGCTGCAGCAGTGGACCTGTTCTGGAAAATGGAACACCACGAATGGGATAAATTCACTTATGGTATTATAATTAATGAGTTATTCAAAGCTGGGAAGAGTACTGATGGGATGAAGATACTTGAGCACATACCCGTCGAACTCGGACCAGCAAGGCGTAGAAGAGCAGATTTCTTCGAGGCTGCGGAGCATGGATCAGCGGCGATTGACCGCATGAAGTTTCTGATGCATTGGATTAGCGGCGACTGGGATCGGACGGCAGAGAGTAGGGCCTATGACTTCCGGCTTTGCATCGAGATCCGAGTTCACCACCAGCGAGGTAGCTCCGGCCGGAGCTTCTTCATCATCTTTAGGCAAGCCGACACTGTTTGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

255

Amino Acids

28.96

Weight (kDa)

8.63

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
AciI CCGC 5 cut(s) 63, 575, 590, 601, 630
AclI AACGTT 1 cut(s) 49
AclWI GGATC 3 cut(s) 592, 648, 682
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 1 cut(s) 443
AfaI GTAC 2 cut(s) 244, 493
AfiI CCNNNNNNNGG 1 cut(s) 436
AgsI TTSAA 3 cut(s) 97, 172, 478
AluBI AGCT 4 cut(s) 387, 482, 714, 726
AluI AGCT 4 cut(s) 387, 482, 714, 726
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 3 cut(s) 592, 648, 682
AoxI GGCC 3 cut(s) 285, 660, 718
ApeKI GCWGC 3 cut(s) 395, 398, 572
ApoI RAATTY 1 cut(s) 443
AseI ATTAAT 2 cut(s) 261, 465
AspS9I GGNCC 3 cut(s) 406, 536, 660
AsuHPI GGTGA 1 cut(s) 689
AvaII GGWCC 2 cut(s) 406, 536
AxyI CCTNAGG 2 cut(s) 132, 339
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 3 cut(s) 382, 410, 559
BccI CCATC 2 cut(s) 205, 491
BceAI ACGGC 1 cut(s) 663
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 5 cut(s) 396, 399, 573, 591, 631
BlsI GCNGC 5 cut(s) 397, 400, 574, 592, 632
BmcAI AGTACT 1 cut(s) 493
Bme18I GGWCC 2 cut(s) 406, 536
BmgT120I GGNCC 3 cut(s) 406, 536, 660
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 2 cut(s) 606, 690
BmuI ACTGGG 1 cut(s) 646
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 641
Bse21I CCTNAGG 2 cut(s) 132, 339
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 641
BseX3I CGGCCG 1 cut(s) 718
BseXI GCAGC 3 cut(s) 382, 410, 559
BseYI CCCAGC 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 721
BshFI GGCC 3 cut(s) 287, 662, 720
BsiEI CGRYCG 1 cut(s) 721
BsiHKAI GWGCWC 1 cut(s) 519
BsiSI CCGG 3 cut(s) 673, 717, 721
BslI CCNNNNNNNGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 3 cut(s) 287, 662, 720
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 3 cut(s) 584, 640, 687
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 5 cut(s) 63, 575, 590, 601, 630
BspANI GGCC 3 cut(s) 287, 662, 720
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 3 cut(s) 592, 648, 682
BspQI GCTCTTC 1 cut(s) 547
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 584, 640, 687
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 40, 187, 757
Bst6I CTCTTC 2 cut(s) 482, 547
BstC8I GCNNGC 2 cut(s) 8, 747
BstDEI CTNAG 3 cut(s) 85, 132, 339
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 507
BstKTI GATC 3 cut(s) 587, 643, 690
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 3 cut(s) 584, 640, 687
BstMCI CGRYCG 1 cut(s) 721
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstPAI GACNNNNGTC 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 3 cut(s) 382, 410, 559
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
BstZI CGGCCG 1 cut(s) 718
Bsu36I CCTNAGG 2 cut(s) 132, 339
BsuRI GGCC 3 cut(s) 287, 662, 720
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 507
BtsI GCAGTG 2 cut(s) 165, 408
BtsIMutI CAGTG 4 cut(s) 165, 183, 408, 753
Cac8I GCNNGC 2 cut(s) 8, 747
Cfr13I GGNCC 3 cut(s) 406, 536, 660
Csp6I GTAC 2 cut(s) 243, 492
CviAII CATG 4 cut(s) 103, 326, 581, 604
CviQI GTAC 2 cut(s) 243, 492
DdeI CTNAG 3 cut(s) 85, 132, 339
DpnI GATC 3 cut(s) 586, 642, 689
DpnII GATC 3 cut(s) 584, 640, 687
EaeI YGGCCR 1 cut(s) 718
EagI CGGCCG 1 cut(s) 718
Eam1104I CTCTTC 2 cut(s) 482, 547
EarI CTCTTC 2 cut(s) 482, 547
EclXI CGGCCG 1 cut(s) 718
Eco130I CCWWGG 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 2 cut(s) 406, 536
Eco52I CGGCCG 1 cut(s) 718
Eco81I CCTNAGG 2 cut(s) 132, 339
EcoO109I RGGNCCY 1 cut(s) 660
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 4 cut(s) 106, 329, 584, 607
FatI CATG 4 cut(s) 102, 325, 580, 603
Fnu4HI GCNGC 5 cut(s) 396, 399, 573, 591, 631
FokI GGATG 1 cut(s) 514
Fsp4HI GCNGC 5 cut(s) 396, 399, 573, 591, 631
GluI GCNGC 5 cut(s) 396, 399, 573, 591, 631
GsaI CCCAGC 1 cut(s) 486
HaeIII GGCC 3 cut(s) 287, 662, 720
HapII CCGG 3 cut(s) 673, 717, 721
Hin1II CATG 4 cut(s) 106, 329, 584, 607
HinfI GANTC 3 cut(s) 56, 280, 355
HpaII CCGG 3 cut(s) 673, 717, 721
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 2 cut(s) 406, 697
Hpy188I TCNGA 6 cut(s) 279, 354, 536, 615, 645, 692
Hpy188III TCNNGA 2 cut(s) 415, 685
Hpy8I GTNNAC 2 cut(s) 406, 697
Hpy99I CGWCG 1 cut(s) 530
HpyCH4III ACNGT 3 cut(s) 40, 187, 757
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 5 cut(s) 6, 378, 398, 619, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpyF3I CTNAG 3 cut(s) 85, 132, 339
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 4 cut(s) 106, 329, 584, 607
Kzo9I GATC 3 cut(s) 584, 640, 687
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 3 cut(s) 577, 719, 723
Lsp1109I GCAGC 3 cut(s) 382, 410, 559
LweI GCATC 2 cut(s) 606, 690
MaeII ACGT 1 cut(s) 49
MalI GATC 3 cut(s) 586, 642, 689
MboI GATC 3 cut(s) 584, 640, 687
MboII GAAGA 6 cut(s) 44, 499, 517, 556, 564, 721
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 5 cut(s) 97, 262, 312, 443, 462
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 4 cut(s) 136, 334, 562, 701
Mph1103I ATGCAT 1 cut(s) 621
MseI TTAA 5 cut(s) 108, 141, 261, 321, 465
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 3 cut(s) 673, 717, 721
MwoI GCNNNNNNNGC 1 cut(s) 384
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 584, 640, 687
NlaIII CATG 4 cut(s) 106, 329, 584, 607
NsiI ATGCAT 1 cut(s) 621
PciSI GCTCTTC 1 cut(s) 547
PfeI GAWTC 3 cut(s) 56, 280, 355
PkrI GCNGC 5 cut(s) 397, 400, 574, 592, 632
PshAI GACNNNNGTC 1 cut(s) 294
PshBI ATTAAT 2 cut(s) 261, 465
PsiI TTATAA 1 cut(s) 461
Psp1406I AACGTT 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 482
PspPI GGNCC 3 cut(s) 406, 536, 660
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 687
RsaI GTAC 2 cut(s) 244, 493
RsaNI GTAC 2 cut(s) 243, 492
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 5 cut(s) 108, 141, 261, 321, 465
SatI GCNGC 5 cut(s) 396, 399, 573, 591, 631
Sau3AI GATC 3 cut(s) 584, 640, 687
Sau96I GGNCC 3 cut(s) 406, 536, 660
ScaI AGTACT 1 cut(s) 493
SduI GDGCHC 1 cut(s) 519
SetI ASST 8 cut(s) 52, 235, 389, 411, 484, 712, 716, 728
SfaNI GCATC 2 cut(s) 606, 690
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 2 cut(s) 406, 536
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 5 cut(s) 97, 262, 312, 443, 462
SsiI CCGC 5 cut(s) 63, 575, 590, 601, 630
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 3 cut(s) 40, 187, 757
TaiI ACGT 1 cut(s) 52
TaqI TCGA 3 cut(s) 528, 567, 684
TasI AATT 5 cut(s) 97, 262, 312, 443, 462
TatI WGTACW 1 cut(s) 491
TauI GCSGC 2 cut(s) 593, 633
TfiI GAWTC 3 cut(s) 56, 280, 355
Tru1I TTAA 5 cut(s) 108, 141, 261, 321, 465
Tru9I TTAA 5 cut(s) 108, 141, 261, 321, 465
TscAI CASTG 4 cut(s) 165, 190, 408, 760
TseI GCWGC 3 cut(s) 395, 398, 572
TspDTI ATGAA 6 cut(s) 93, 128, 263, 518, 620, 721
TspRI CASTG 4 cut(s) 165, 190, 408, 760
VpaK11BI GGWCC 2 cut(s) 406, 536
VspI ATTAAT 2 cut(s) 261, 465
XapI RAATTY 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.