Prupe.1G160300_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001472
Physical Location & Seq
Reverse (-)
12754823 .. 12755782
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G160300.1

Sequence Viewer

Length: 804 bp
ATGCGTTGTAAATCTGGTAATCTTGGGTTAGATGAAGCACTGGGTCACTTCAATTCCGTAATTCAAATGAATCCCATTCCCTCGATTTGGGCTATCAATCATTTGTTTGGGGCACTATCCAAGATGAATCAGCGTTCCGCTGTAGTTTCTATGTATAAACAGATGCTTGCTTGTGTTGGCTTACAGCCCGAAGTCTGTACACTGAATATTGTTATCAATTGCTTGTGCCGTATGAATCGGGTGGACTTGGGTTTCTCTGTTTTAGCAACTACCCTTAAACATGGTCTTCAGCCCAATGCTTATACTCTAAATGCTTTGCATAATGGGGAGAAAGGATTAGCATGCAGTGAAGTCACTTACGCTCGTATAATTAATTTGTTATGCCGAACTGGGAAAACATGTATTGCACTTGAGATACTCGAGCACAACTATCAAGATGGAAGGTTTAAGCCCAACCCTCAATGCTATAATCCAATCATTGACAGCTTATGCAAAGAAAGACGCGTAGACCAGCGAGCACTTGCTCTGTTTGAAATAATGAATGAGAAAGGCATAATTCCAGATGTTGTCACTTTTACTTCCTTAATTCCAGCAGCATGCAAGTCTGGAAAATGGGAGGAAGCTGTGCGGCTATTTAGAAACTTGATTGATTGTGGAGCCTTGCCTAATATTCTTATATTCAATTCTGCGTTGGATGCTTTATGCAAAGATGGGAAGACAGCAGAGGCACTTAACCTTGTGGAAGAAATGCTCCTTAGAGGTGTAAAGCCTGATCTCGTCACCTACAACTCCTTAATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

268

Amino Acids

29.58

Weight (kDa)

8.2

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 507
AccII CGCG 1 cut(s) 504
AciI CCGC 2 cut(s) 138, 628
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 87
AflIII ACRYGT 2 cut(s) 398, 502
AgsI TTSAA 4 cut(s) 52, 65, 533, 682
AluBI AGCT 2 cut(s) 486, 623
AluI AGCT 2 cut(s) 486, 623
Alw21I GWGCWC 2 cut(s) 426, 520
Ama87I CYCGRG 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 593
AseI ATTAAT 2 cut(s) 372, 798
AsuHPI GGTGA 1 cut(s) 772
AvaI CYCGRG 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 115
BbsI GAAGAC 2 cut(s) 278, 722
Bbv12I GWGCWC 2 cut(s) 426, 520
BbvI GCAGC 1 cut(s) 605
BccI CCATC 2 cut(s) 431, 704
BceAI ACGGC 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 594, 629
BlsI GCNGC 2 cut(s) 595, 630
BmeT110I CYCGRG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 658
BmrI ACTGGG 2 cut(s) 50, 399
BmsI GCATC 2 cut(s) 153, 685
BmuI ACTGGG 2 cut(s) 50, 399
BpiI GAAGAC 2 cut(s) 278, 722
BpuEI CTTGAG 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 2 cut(s) 45, 394
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 45, 394
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 504
BsiHKAI GWGCWC 2 cut(s) 426, 520
BsiHKCI CYCGRG 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 3 cut(s) 115, 426, 520
Bsp1407I TGTACA 1 cut(s) 197
Bsp143I GATC 1 cut(s) 772
BspACI CCGC 2 cut(s) 138, 628
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 1 cut(s) 658
BsrGI TGTACA 1 cut(s) 197
BsrI ACTGG 2 cut(s) 45, 394
BssMI GATC 1 cut(s) 772
BstAUI TGTACA 1 cut(s) 197
BstC8I GCNNGC 4 cut(s) 168, 343, 516, 598
BstDEI CTNAG 1 cut(s) 755
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 1 cut(s) 775
BstMBI GATC 1 cut(s) 772
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstNSI RCATGY 3 cut(s) 345, 402, 600
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 605
BstV2I GAAGAC 2 cut(s) 278, 722
BtsCI GGATG 1 cut(s) 700
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 3 cut(s) 38, 200, 352
Cac8I GCNNGC 4 cut(s) 168, 343, 516, 598
CseI GACGC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 198
CviAII CATG 4 cut(s) 281, 342, 399, 597
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 755
DpnI GATC 1 cut(s) 774
DpnII GATC 1 cut(s) 772
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 419
FaeI CATG 4 cut(s) 284, 345, 402, 600
FatI CATG 4 cut(s) 280, 341, 398, 596
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 2 cut(s) 594, 629
FokI GGATG 1 cut(s) 707
Fsp4HI GCNGC 2 cut(s) 594, 629
GluI GCNGC 2 cut(s) 594, 629
HgaI GACGC 1 cut(s) 510
Hin1II CATG 4 cut(s) 284, 345, 402, 600
HinfI GANTC 3 cut(s) 70, 127, 235
HphI GGTGA 1 cut(s) 772
Hpy166II GTNNAC 3 cut(s) 200, 244, 508
Hpy188III TCNNGA 3 cut(s) 434, 560, 606
Hpy8I GTNNAC 3 cut(s) 200, 244, 508
HpyAV CCTTC 1 cut(s) 435
HpyCH4V TGCA 6 cut(s) 319, 345, 407, 492, 600, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpyF3I CTNAG 1 cut(s) 755
Hsp92II CATG 4 cut(s) 284, 345, 402, 600
Kzo9I GATC 1 cut(s) 772
LmnI GCTCC 2 cut(s) 656, 756
LpnPI CCDG 7 cut(s) 26, 375, 524, 573, 591, 603, 783
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 2 cut(s) 153, 685
MaeIII GTNAC 4 cut(s) 44, 352, 568, 778
MalI GATC 1 cut(s) 774
MboI GATC 1 cut(s) 772
MboII GAAGA 3 cut(s) 278, 727, 755
MfeI CAATTG 1 cut(s) 217
MhlI GDGCHC 3 cut(s) 115, 426, 520
MluI ACGCGT 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 5 cut(s) 91, 468, 610, 718, 752
MseI TTAA 7 cut(s) 276, 372, 447, 584, 732, 794, 798
MspA1I CMGCKG 1 cut(s) 140
MunI CAATTG 1 cut(s) 217
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 695
NdeII GATC 1 cut(s) 772
NlaIII CATG 4 cut(s) 284, 345, 402, 600
NlaIV GGNNCC 1 cut(s) 658
NmuCI GTSAC 4 cut(s) 44, 352, 568, 778
NspI RCATGY 3 cut(s) 345, 402, 600
PacI TTAATTAA 1 cut(s) 798
PaeI GCATGC 2 cut(s) 345, 600
PaeR7I CTCGAG 1 cut(s) 419
PciI ACATGT 1 cut(s) 398
PfeI GAWTC 3 cut(s) 70, 127, 235
PkrI GCNGC 2 cut(s) 595, 630
PscI ACATGT 1 cut(s) 398
PshBI ATTAAT 2 cut(s) 372, 798
PspN4I GGNNCC 1 cut(s) 658
PspXI VCTCGAGB 1 cut(s) 419
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SaqAI TTAA 7 cut(s) 276, 372, 447, 584, 732, 794, 798
SatI GCNGC 2 cut(s) 594, 629
Sau3AI GATC 1 cut(s) 772
SduI GDGCHC 3 cut(s) 115, 426, 520
SetI ASST 6 cut(s) 446, 488, 625, 738, 763, 785
SfaNI GCATC 2 cut(s) 153, 685
SfcI CTRYAG 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 419
SlaI CTCGAG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 410, 419
SmoI CTYRAG 2 cut(s) 410, 419
SphI GCATGC 2 cut(s) 345, 600
SsiI CCGC 2 cut(s) 138, 628
SspI AATATT 2 cut(s) 208, 670
TaqI TCGA 2 cut(s) 83, 420
TatI WGTACW 1 cut(s) 197
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 3 cut(s) 70, 127, 235
Tru1I TTAA 7 cut(s) 276, 372, 447, 584, 732, 794, 798
Tru9I TTAA 7 cut(s) 276, 372, 447, 584, 732, 794, 798
TscAI CASTG 3 cut(s) 45, 207, 352
TseFI GTSAC 4 cut(s) 44, 352, 568, 778
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 4 cut(s) 44, 352, 568, 778
TspDTI ATGAA 5 cut(s) 48, 83, 140, 248, 554
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 3 cut(s) 45, 207, 352
VspI ATTAAT 2 cut(s) 372, 798
XceI RCATGY 3 cut(s) 345, 402, 600
XhoI CTCGAG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.