MD04G1021600.v1.1

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001472
Physical Location & Seq
Reverse (-)
2552276 .. 2563820
11545 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1021600.v1.1.491

Sequence Viewer

Length: 1566 bp
ATGAAAAGGATAACTACAAGAATTCCATTCCCAGGTAATCTTCCTTCTTTCATTTTTACCATTCTGCAGAATCCAAGTCGGGGATTTCATTCCGACGCTGTTAATGCTAATCCTACTTGTACGCATACAATTAAACAAACCCATTTGGTGTCGGAGAGTATGATTCAGACTCGATGCAAATCTGGAAAAATTAGGAAAGATGAAGCCTTGGGTTACTTTTATTCCATGATTCAAATCAAACCCTTGCCCTCTGTTTGGACTTTGAATTATTTGTTGGGGGCACTCTCCAAGATGAAGGAATATTCTGCTGTGGTTTCTATGTGTAAACAGTTGATGGGTTGCGCTCAATTCCGACCTGATGTCTGTACAATGAATATTTTTCTGAATTGCTTGTGCCGGCTGAACCGGATGAACGCTTGTTTCTCTGTTTTAGCAATTACCCTTAAATACGGTCTTCAACCCAATGCTCATTCTATAACTACTTTTCTTCATGGGCTTTGCAAGAATTGTTCCCTGGCGGAGGCAATGGAGTTCTTCGAAGAAATAGAAACGAAAGGATACGCGTGCAATGAAATAACTTATGCTACTATGATCAATGGACTATGCAAAGCTGGGAAAACTTCTAAGGCTCTCGAGATACTTACGAAGATGCACTCGGAGACTCTTAAGAAGATGTGGGAAGATGGAAGGTTTGAGCCAAAACAAGATTGCTACAATCCAATCATCGATAGCTTGTGTAAAGAAAGCCGAATGGATGAGGCCTTGACCTTATTTCGAGATATGATCAGCAAAAGTGTTGTACCGGATATTATCAGTTATAACTCTTTGATTCATGGGTTATGCAACATGAGTCGCTGGGAAGAAGTGCTCCCTCTTTTTGAAGGAATGGAAGATCATGGAGTCAGGCCAGATGTTGTCACCTACAACACTCTAATTTATGCATTGTGCCAATCGGGGAGGTTGGAAAAGGCCAAGAGCTTCTTGATTTGCATGCTTAACGGCGGAATTTCACCAGATGTATACACATATAGTGTTCTAATGAACTCGTTGTGCAAGGATGACAGAATTCAAGAAGCACTTTCTCTGTTGGAAAATATGACAACGAAAGGCATAAAGCCTGATGTTGTCACTTTTAAATCCTTGATTTCTGCTTCATGCAAGTGTGGTAACTGGGAAGAATGTGTGAGGTTATTCAAAACCATGATTGGTTATGGAGCCTTGCCTGATATTGTTACATACAATTCTGTACTGGATGGTTTATGCAAGGAAGGGAAGACAACAGAGGCACTGAATCTTGTCGACGAAATGTTCCGTAGAGGGGAAAAGCCTGATGTTGTGACTTACAGCACTTTAATTAAAGGATTGTGTCGTACCAGGCAATGGAAAGAAGCCACAAGGTTATTTGACGAAATGGTATGCCATGGAATCTTACCTGATTTCGTAACTTTGAAGATACTTTCGGGTGCTCTCTGCCATGAAGTGTTGACCGATGAGGTTCGCGAAGAATTTAAGGCGAGAATAGATGGAACTTCGAAGCTTGGTAAGAAAAGGTCCAAGAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

522

Amino Acids

58.83

Weight (kDa)

8.37

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 119 - 168 3.7e-10 PPR repeat family
PPR_2 PF13041 159 - 203 3.2e-11 PPR repeat family
TPR_24 PF23276 175 - 292 5.6e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 185 - 217 9.3e-10 PPR repeat
PPR PF01535 192 - 219 2.6e-06 PPR repeat
PPR_1 PF12854 235 - 261 4.7e-07 PPR repeat
PPR_2 PF13041 236 - 282 1.2e-14 PPR repeat family
PPR PF01535 237 - 265 8.4e-06 PPR repeat
PPR_long PF17177 242 - 390 9.2e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 265 - 297 7e-06 PPR repeat
PPR_2 PF13041 268 - 317 1.8e-16 PPR repeat family
PPR_3 PF13812 292 - 349 1e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 296 - 400 4.3e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 300 - 331 3.3e-11 PPR repeat
PPR_2 PF13041 303 - 352 9e-18 PPR repeat family
PPR PF01535 306 - 336 7.7e-07 PPR repeat
PPR_1 PF12854 335 - 367 2.8e-09 PPR repeat
PPR PF01535 341 - 371 6.5e-06 PPR repeat
PPR_2 PF13041 346 - 387 4.8e-11 PPR repeat family
PPR_3 PF13812 361 - 418 6.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 369 - 401 2.8e-09 PPR repeat
PPR_2 PF13041 373 - 422 3.2e-14 PPR repeat family
PPR PF01535 376 - 405 3.1e-06 PPR repeat
PPR_1 PF12854 405 - 436 4.5e-11 PPR repeat
PPR_2 PF13041 408 - 457 1.5e-20 PPR repeat family
PPR PF01535 411 - 440 6.1e-08 PPR repeat
PPR_3 PF13812 432 - 482 2.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 440 - 472 1.2e-12 PPR repeat
PPR PF01535 446 - 476 2.1e-08 PPR repeat
PPR_2 PF13041 450 - 492 1.7e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 1380
AccI GTMKAC 2 cut(s) 1020, 1299
AccII CGCG 2 cut(s) 563, 1500
AciI CCGC 2 cut(s) 518, 1002
AcsI RAATTY 4 cut(s) 21, 1005, 1065, 1505
AfaI GTAC 5 cut(s) 121, 367, 801, 1248, 1372
AfiI CCNNNNNNNGG 6 cut(s) 32, 80, 255, 520, 1318, 1380
AflII CTTAAG 1 cut(s) 665
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 7 cut(s) 233, 265, 458, 881, 1070, 1195, 1450
AhdI GACNNNNNGTC 1 cut(s) 359
AjnI CCWGG 3 cut(s) 31, 513, 1373
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 4 cut(s) 611, 732, 978, 1537
AluI AGCT 4 cut(s) 611, 732, 978, 1537
Alw21I GWGCWC 2 cut(s) 870, 1468
Alw26I GTCTC 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 3 cut(s) 759, 905, 969
ApoI RAATTY 4 cut(s) 21, 1005, 1065, 1505
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 1551
AsuHPI GGTGA 2 cut(s) 910, 1002
AsuII TTCGAA 2 cut(s) 537, 1532
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 1551
BaeGI GKGCMC 1 cut(s) 283
BarI GAAGNNNNNNTAC 2 cut(s) 28, 60
BbsI GAAGAC 2 cut(s) 446, 1280
Bbv12I GWGCWC 2 cut(s) 870, 1468
BccI CCATC 4 cut(s) 328, 677, 1247, 1517
BceAI ACGGC 1 cut(s) 1015
BciT130I CCWGG 3 cut(s) 33, 515, 1375
BciVI GTATCC 1 cut(s) 551
BclI TGATCA 2 cut(s) 591, 783
BcoDI GTCTC 1 cut(s) 653
BfmI CTRYAG 1 cut(s) 65
BfrI CTTAAG 1 cut(s) 665
BfuI GTATCC 1 cut(s) 551
Bme1390I CCNGG 3 cut(s) 33, 515, 1375
Bme18I GGWCC 1 cut(s) 1551
BmeRI GACNNNNNGTC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 1551
BmiI GGNNCC 1 cut(s) 1216
BmrFI CCNGG 3 cut(s) 33, 515, 1375
BmrI ACTGGG 1 cut(s) 1180
BmsI GCATC 2 cut(s) 164, 639
BmuI ACTGGG 1 cut(s) 1180
BpiI GAAGAC 2 cut(s) 446, 1280
Bpu14I TTCGAA 2 cut(s) 537, 1532
Bsa29I ATCGAT 1 cut(s) 726
BsaBI GATNNNNATC 2 cut(s) 178, 233
BsaJI CCNNGG 4 cut(s) 31, 207, 513, 1420
BsaWI WCCGGW 2 cut(s) 405, 802
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 80, 255, 520, 1318, 1380
Bse118I RCCGGY 1 cut(s) 396
Bse1I ACTGG 2 cut(s) 1175, 1254
Bse3DI GCAATG 3 cut(s) 531, 574, 1385
Bse8I GATNNNNATC 2 cut(s) 178, 233
BseBI CCWGG 3 cut(s) 33, 515, 1375
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 4 cut(s) 31, 207, 513, 1420
BseGI GGATG 4 cut(s) 414, 760, 1063, 1258
BseJI GATNNNNATC 2 cut(s) 178, 233
BseLI CCNNNNNNNGG 6 cut(s) 32, 80, 255, 520, 1318, 1380
BseMI GCAATG 3 cut(s) 531, 574, 1385
BseNI ACTGG 2 cut(s) 1175, 1254
BseSI GKGCMC 1 cut(s) 283
BseYI CCCAGC 2 cut(s) 611, 855
Bsh1236I CGCG 2 cut(s) 563, 1500
BshFI GGCC 3 cut(s) 761, 907, 971
BshVI ATCGAT 1 cut(s) 726
BsiHKAI GWGCWC 2 cut(s) 870, 1468
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 3 cut(s) 397, 406, 803
BslI CCNNNNNNNGG 6 cut(s) 32, 80, 255, 520, 1318, 1380
BsmAI GTCTC 1 cut(s) 653
BsnI GGCC 3 cut(s) 761, 907, 971
BsoBI CYCGRG 1 cut(s) 632
Bsp119I TTCGAA 2 cut(s) 537, 1532
Bsp1286I GDGCHC 3 cut(s) 283, 870, 1468
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 3 cut(s) 591, 783, 892
Bsp19I CCATGG 1 cut(s) 1420
Bsp68I TCGCGA 1 cut(s) 1500
BspACI CCGC 2 cut(s) 518, 1002
BspANI GGCC 3 cut(s) 761, 907, 971
BspDI ATCGAT 1 cut(s) 726
BspFNI CGCG 2 cut(s) 563, 1500
BspLI GGNNCC 1 cut(s) 1216
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 2 cut(s) 537, 1532
BspTI CTTAAG 1 cut(s) 665
BsrDI GCAATG 3 cut(s) 531, 574, 1385
BsrFI RCCGGY 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 2 cut(s) 1175, 1254
BssAI RCCGGY 1 cut(s) 396
BssECI CCNNGG 4 cut(s) 31, 207, 513, 1420
BssMI GATC 3 cut(s) 591, 783, 892
BssNAI GTATAC 1 cut(s) 1021
BssT1I CCWWGG 2 cut(s) 207, 1420
Bst1107I GTATAC 1 cut(s) 1021
Bst2UI CCWGG 3 cut(s) 33, 515, 1375
Bst4CI ACNGT 2 cut(s) 330, 452
BstAFI CTTAAG 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 365
BstBI TTCGAA 2 cut(s) 537, 1532
BstC8I GCNNGC 3 cut(s) 398, 565, 992
BstDEI CTNAG 1 cut(s) 624
BstDSI CCRYGG 1 cut(s) 1420
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 4 cut(s) 414, 760, 1063, 1258
BstFNI CGCG 2 cut(s) 563, 1500
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 3 cut(s) 594, 786, 895
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 3 cut(s) 591, 783, 892
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 3 cut(s) 33, 515, 1375
BstNSI RCATGY 1 cut(s) 994
BstSCI CCNGG 3 cut(s) 31, 513, 1373
BstSFI CTRYAG 1 cut(s) 65
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 2 cut(s) 563, 1500
BstV2I GAAGAC 2 cut(s) 446, 1280
BstZ17I GTATAC 1 cut(s) 1021
Bsu15I ATCGAT 1 cut(s) 726
BsuI GTATCC 1 cut(s) 551
BsuRI GGCC 3 cut(s) 761, 907, 971
BsuTUI ATCGAT 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 1420
BtsCI GGATG 4 cut(s) 414, 760, 1063, 1258
BtsIMutI CAGTG 1 cut(s) 1286
BtuMI TCGCGA 1 cut(s) 1500
Cac8I GCNNGC 3 cut(s) 398, 565, 992
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 1551
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 1 cut(s) 104
Csp6I GTAC 5 cut(s) 120, 366, 800, 1247, 1371
CviQI GTAC 5 cut(s) 120, 366, 800, 1247, 1371
DdeI CTNAG 1 cut(s) 624
DpnI GATC 3 cut(s) 593, 785, 894
DpnII GATC 3 cut(s) 591, 783, 892
DraI TTTAAA 1 cut(s) 1135
DriI GACNNNNNGTC 1 cut(s) 359
Eam1105I GACNNNNNGTC 1 cut(s) 359
EciI GGCGGA 2 cut(s) 533, 1017
Eco130I CCWWGG 2 cut(s) 207, 1420
Eco147I AGGCCT 1 cut(s) 761
Eco47I GGWCC 1 cut(s) 1551
Eco88I CYCGRG 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoRI GAATTC 2 cut(s) 21, 1065
EcoRII CCWGG 3 cut(s) 31, 513, 1373
EcoT14I CCWWGG 2 cut(s) 207, 1420
EcoT22I ATGCAT 1 cut(s) 943
ErhI CCWWGG 2 cut(s) 207, 1420
FalI AAGNNNNNCTT 4 cut(s) 965, 997, 1062, 1094
FbaI TGATCA 2 cut(s) 591, 783
FblI GTMKAC 2 cut(s) 1020, 1299
FokI GGATG 4 cut(s) 421, 767, 1070, 1265
GlaI GCGC 1 cut(s) 343
GsaI CCCAGC 2 cut(s) 615, 859
HaeIII GGCC 3 cut(s) 761, 907, 971
HapII CCGG 3 cut(s) 397, 406, 803
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 344
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 2 cut(s) 1300, 1485
HindII GTYRAC 2 cut(s) 1300, 1485
HindIII AAGCTT 1 cut(s) 1535
HpaII CCGG 3 cut(s) 397, 406, 803
HphI GGTGA 2 cut(s) 910, 1002
Hpy166II GTNNAC 4 cut(s) 326, 1021, 1300, 1485
Hpy188I TCNGA 6 cut(s) 94, 154, 168, 353, 384, 658
Hpy188III TCNNGA 7 cut(s) 183, 632, 634, 776, 982, 1070, 1499
Hpy8I GTNNAC 4 cut(s) 326, 1021, 1300, 1485
Hpy99I CGWCG 2 cut(s) 98, 1304
HpyAV CCTTC 6 cut(s) 54, 289, 681, 875, 1262, 1552
HpyCH4III ACNGT 2 cut(s) 330, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 624
HspAI GCGC 1 cut(s) 342
KroI GCCGGC 1 cut(s) 396
KroNI GCCGGC 1 cut(s) 398
Ksp22I TGATCA 2 cut(s) 591, 783
Kzo9I GATC 3 cut(s) 591, 783, 892
LmnI GCTCC 2 cut(s) 873, 1214
LweI GCATC 2 cut(s) 164, 639
MaeIII GTNAC 7 cut(s) 212, 916, 1126, 1166, 1231, 1336, 1441
MalI GATC 3 cut(s) 593, 785, 894
MboI GATC 3 cut(s) 591, 783, 892
MhlI GDGCHC 3 cut(s) 283, 870, 1468
MluI ACGCGT 1 cut(s) 561
MlyI GAGTC 4 cut(s) 163, 655, 859, 909
MmeI TCCRAC 5 cut(s) 117, 132, 376, 942, 1068
MnlI CCTC 9 cut(s) 259, 514, 751, 882, 951, 1179, 1276, 1310, 1486
Mph1103I ATGCAT 1 cut(s) 943
MroNI GCCGGC 1 cut(s) 396
MseI TTAA 9 cut(s) 102, 132, 444, 666, 996, 1134, 1352, 1356, 1509
MslI CAYNNNNRTG 1 cut(s) 1159
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 3 cut(s) 397, 406, 803
MspR9I CCNGG 3 cut(s) 33, 515, 1375
MvaI CCWGG 3 cut(s) 33, 515, 1375
MvnI CGCG 2 cut(s) 563, 1500
MwoI GCNNNNNNNGC 1 cut(s) 104
NaeI GCCGGC 1 cut(s) 398
NcoI CCATGG 1 cut(s) 1420
NdeII GATC 3 cut(s) 591, 783, 892
NgoMIV GCCGGC 1 cut(s) 396
NlaIV GGNNCC 1 cut(s) 1216
NmuCI GTSAC 3 cut(s) 916, 1126, 1336
NruI TCGCGA 1 cut(s) 1500
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 1 cut(s) 994
NspV TTCGAA 2 cut(s) 537, 1532
PacI TTAATTAA 1 cut(s) 1356
PaeI GCATGC 1 cut(s) 994
PaeR7I CTCGAG 1 cut(s) 632
PceI AGGCCT 1 cut(s) 761
PdiI GCCGGC 1 cut(s) 398
PfeI GAWTC 6 cut(s) 70, 163, 229, 829, 1291, 1425
PflMI CCANNNNNTGG 1 cut(s) 1380
PleI GAGTC 4 cut(s) 163, 655, 858, 908
PpsI GAGTC 4 cut(s) 163, 655, 858, 908
PsiI TTATAA 1 cut(s) 819
Psp6I CCWGG 3 cut(s) 31, 513, 1373
PspFI CCCAGC 2 cut(s) 611, 855
PspGI CCWGG 3 cut(s) 31, 513, 1373
PspN4I GGNNCC 1 cut(s) 1216
PspPI GGNCC 1 cut(s) 1551
PstI CTGCAG 1 cut(s) 69
RruI TCGCGA 1 cut(s) 1500
RsaI GTAC 5 cut(s) 121, 367, 801, 1248, 1372
RsaNI GTAC 5 cut(s) 120, 366, 800, 1247, 1371
RseI CAYNNNNRTG 1 cut(s) 1159
SalI GTCGAC 1 cut(s) 1298
SaqAI TTAA 9 cut(s) 102, 132, 444, 666, 996, 1134, 1352, 1356, 1509
Sau3AI GATC 3 cut(s) 591, 783, 892
Sau96I GGNCC 1 cut(s) 1551
SchI GAGTC 4 cut(s) 163, 655, 859, 909
ScrFI CCNGG 3 cut(s) 33, 515, 1375
SduI GDGCHC 3 cut(s) 283, 870, 1468
SfaNI GCATC 2 cut(s) 164, 639
SfcI CTRYAG 1 cut(s) 65
Sfr274I CTCGAG 1 cut(s) 632
SfuI TTCGAA 2 cut(s) 537, 1532
SinI GGWCC 1 cut(s) 1551
SlaI CTCGAG 1 cut(s) 632
SmiMI CAYNNNNRTG 1 cut(s) 1159
SmlI CTYRAG 2 cut(s) 632, 665
SmoI CTYRAG 2 cut(s) 632, 665
SphI GCATGC 1 cut(s) 994
SseBI AGGCCT 1 cut(s) 761
SsiI CCGC 2 cut(s) 518, 1002
SspI AATATT 2 cut(s) 302, 376
StuI AGGCCT 1 cut(s) 761
StyD4I CCNGG 3 cut(s) 31, 513, 1373
StyI CCWWGG 2 cut(s) 207, 1420
TaaI ACNGT 2 cut(s) 330, 452
TaqI TCGA 7 cut(s) 172, 537, 633, 726, 775, 1299, 1532
TaqII GACCGA 1 cut(s) 1502
TatI WGTACW 2 cut(s) 365, 1246
TfiI GAWTC 6 cut(s) 70, 163, 229, 829, 1291, 1425
Tru1I TTAA 9 cut(s) 102, 132, 444, 666, 996, 1134, 1352, 1356, 1509
Tru9I TTAA 9 cut(s) 102, 132, 444, 666, 996, 1134, 1352, 1356, 1509
TscAI CASTG 1 cut(s) 1293
TseFI GTSAC 3 cut(s) 916, 1126, 1336
Tsp45I GTSAC 3 cut(s) 916, 1126, 1336
TspGWI ACGGA 1 cut(s) 1301
TspRI CASTG 1 cut(s) 1293
Van91I CCANNNNNTGG 1 cut(s) 1380
Vha464I CTTAAG 1 cut(s) 665
VpaK11BI GGWCC 1 cut(s) 1551
XagI CCTNNNNNAGG 1 cut(s) 518
XapI RAATTY 4 cut(s) 21, 1005, 1065, 1505
XceI RCATGY 1 cut(s) 994
XhoI CTCGAG 1 cut(s) 632
XmiI GTMKAC 2 cut(s) 1020, 1299
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.