Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012322.1

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Forward (+)

95 .. 406

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012322.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgaagactaaagggtttatcccgagtagtaaatcctacaactcgcttgtgaatgctttggctcttagtggagagattgaggaggcagtgaagtatttgtgggagatgattgagaagcgaaggtcaactgaattcattacttataagacagtacttgatgaaatgtgcagacaaggacaggttggacaggcaatgaagttgctaaaagaatttcaagagaaagacattctgagtgggcatgcttacaggaagctccgatatgtgcttgaagatgactatggagattctgtttcccatactcgattgaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

103

Amino Acids

12.0

Weight (kDa)

8.66

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	131, 209
AfaI	GTAC	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	215, 269
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	131, 209
AvaI	CYCGRG	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	11
BmcAI	AGTACT	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse3DI	GCAATG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	65, 230
BstNSI	RCATGY	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	2 cut(s)	62, 253
CviKI_1	RGCY	2 cut(s)	62, 253
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	2 cut(s)	65, 230
Eco88I	CYCGRG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	131
FaeI	CATG	1 cut(s)	242
FaiI	YATR	5 cut(s)	144, 240, 261, 279, 297
FatI	CATG	1 cut(s)	238
Hin1II	CATG	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	2 cut(s)	231, 257
Hpy188III	TCNNGA	2 cut(s)	22, 215
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	65, 230
Hsp92II	CATG	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	3 cut(s)	164, 173, 232
MboII	GAAGA	2 cut(s)	16, 281
MluCI	AATT	2 cut(s)	131, 209
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	73, 76, 300
Mva1269I	GAATGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	242
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	144
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
ScaI	AGTACT	1 cut(s)	153
SetI	ASST	4 cut(s)	125, 183, 255, 311
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	2 cut(s)	131, 209
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	131, 209
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	284
TscAI	CASTG	1 cut(s)	93
TspDTI	ATGAA	4 cut(s)	17, 124, 174, 209
TspRI	CASTG	1 cut(s)	93
XapI	RAATTY	2 cut(s)	131, 209
XceI	RCATGY	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.