Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001472

Physical Location & Seq

Genomic Coordinates Reverse (-)

13067246 .. 13068751

Gene Structure 1506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

GATATGGAGACTCTGATTCAAACACGGTGCAAATCTGGAACACTTAAGTCAGAGGAAGCATTGGGTTACTTCAATTCCATGATTCAAACGAAACCCATTCCCTCTAATTGGACTTTTAAATGTTTGTTTGGGGCACTTTACAAGATGAAGCACTATTCTGCCCTAGTATCTATGTATAAACAGTTGATGGGTTGCCGTCAATTCCAACCTGATGTCACTACAATGAATATTTTCATGAATTGCTTATGCCGTCTGAACAGGGTGGACTTGGGTTTCTCTGTCTTAGCACTTACCTTTAAATATGAAAAAGGATACCCAGATGTTGTCACCTACAATACTCTAATTTATGGATTGTGCCAACCAGGCAAGTGGGAAAAAGCCAAGAACTTCTTGATTTGCATGGTTGACAGTGGAATTCCACCAGACGTATATACCTACGCTGTGCTAATCAGTGCTCTTTGCCGAGAAGAAAGAATTCAAGAAGCGCTTGCTCTGTTCGAGGACATGACTGGGAAAGGCATAAATCCTAATGTTTTCATTTTCAATTCCTTAGTTTCTGCTTCATGCAAGTGTTGCAAATGGGAAAAAGCCTCACAGTTATTTCAAAACATGATTGATTGTGGTTCCTTGCCTGATATTGTAACATTCAACGCTGTTTTGGATGCTTTGTGCAAGGAAGGGAAAATGAGCCGTAGAGGTCAAATGCCTAATCTTGTGACTTACAACTCCTTAATTAATGGATTGTGCCATTCTGGCCAATGGAGAGAAGCCACAAAGTTGTTGAATAAAATGATGGGTGAAGGAATCCCACCAAATGTTGTAACCCTTAACATTGTTATAAAATATCTTTGCAAGTGCCGAAGGACCAATGAAGCCCTCACTGTGCTAGAGCTAATGACTGAAGGAGGTCTAAAACCTAACCTTGTCACTTACAACTGTTTAATATATAGCATGTGCCATAGAGCTCAATCGGGAGAAGCCACAAGGTTGTTTGATGAAATGGTAGGTCGAGGGATCTTACCTGATGCCATAACGTTGAGAACACTTTTGGATGCTCTCTGCCAAGTAAGGATGACAGAGGAGGCTCGCAAAGTATTTGAGGCAAAAATTAAGTATGGTATGGAGCTTAGCACAATATCTTGCAGTATGTTGGTTAATGAATACTGTTTGCTTGGCAGGATGGATAAGGCAAAGAAGGTCTTTAATTTCTTGGTGGCTCTGGGTCATGTGCCTGATATTGCTTCTTGCTATAATGCCTTGGTGAATGGTTATGTGCAAGATAAAAGAATGGGTGAAGCTTTGAGGCTTGCTAAAGAAATGATCCAAAAAGGATTGAGGCCTGATCTAGAGACACAAAAATCTTTGAAAGGTTTCCGTTGTAGAAGGCATGTTGCATCTGTAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

469

Amino Acids

52.85

Weight (kDa)

8.85

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12615
fragaria_vesca	FvH4_3g40110
malus_domestica	MD04G1014300.v1.1 MD04G1014400.v1.1 MD04G1015100.v1.1 MD04G1015700.v1.1 MD04G1015800.v1.1 MD04G1015900.v1.1 MD04G1016200.v1.1 MD04G1021600.v1.1 MD05G1145400.v1.1 MD07G1093000.v1.1 MD10G1069200.v1.1 MD11G1128800.v1.1
prunus_persica	Prupe.1G160300_v2.0.a1 Prupe.1G162600_v2.0.a1 Prupe.1G166700_v2.0.a1 Prupe.1G167000_v2.0.a1 Prupe.6G346200_v2.0.a1
pyrus_communis	pycom04g01130 pycom04g01150 pycom04g01200 pycom04g01740 pycom04g01770 pycom04g10990
rosa_chinensis	RchiOBHm_Chr4g0414121 RchiOBHm_Chr7g0237341
rosa_laevigata	RLG00000008171 RLG00000008172 RLG00000036265
rosa_multiflora	Rmu_co8044332.1_g000001 Rmu_co8232951.1_g000001 Rmu_sc0003264.1_g000004 Rmu_sc0012180.1_g000010 Rmu_sc0012322.1_g000001 Rmu_sc0029476.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018610 Rroxscaffold_5G00358060 Rroxscaffold_5G00358070 Rroxscaffold_5G00358080
rosa_rugosa	Rorug04G0125800 Rorug04G0125900 Rorug04G0126000
rosa_samantha	Rh1DG083800 Rh3BG179700 Rh3DG195400 Rh4AG184400 Rh4BG183800 Rh4DG179700 Rh7BG314900
rosa_wichuraiana	Rw4G015690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
AclI	AACGTT	1 cut(s)	1034
AclWI	GGATC	2 cut(s)	1022, 1315
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	2 cut(s)	414, 474
AcuI	CTGAAG	1 cut(s)	921
AfeI	AGCGCT	1 cut(s)	486
AfiI	CCNNNNNNNGG	1 cut(s)	108
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	9 cut(s)	20, 73, 86, 479, 544, 605, 649, 784, 1366
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	892, 965, 1126, 1298
AluI	AGCT	4 cut(s)	892, 965, 1126, 1298
Alw21I	GWGCWC	2 cut(s)	457, 967
Alw26I	GTCTC	2 cut(s)	2, 1343
AlwI	GGATC	2 cut(s)	1022, 1315
Aor51HI	AGCGCT	1 cut(s)	486
AoxI	GGCC	2 cut(s)	754, 1337
ApoI	RAATTY	2 cut(s)	414, 474
AseI	ATTAAT	1 cut(s)	735
Asp700I	GAANNNNTTC	3 cut(s)	230, 474, 1370
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	864
AsuHPI	GGTGA	4 cut(s)	319, 809, 1273, 1304
AvaII	GGWCC	1 cut(s)	864
BaeGI	GKGCMC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	967
Bbv12I	GWGCWC	2 cut(s)	457, 967
BccI	CCATC	3 cut(s)	181, 787, 1174
BceAI	ACGGC	3 cut(s)	180, 234, 675
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	2, 1343
BfaI	CTAG	3 cut(s)	164, 887, 1346
BfmI	CTRYAG	1 cut(s)	1398
BfoI	RGCGCY	1 cut(s)	488
BfrI	CTTAAG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	305
BglI	GCCNNNNNGGC	2 cut(s)	363, 753
BlpI	GCTNAGC	1 cut(s)	1127
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	864
BmgT120I	GGNCC	1 cut(s)	864
BmiI	GGNNCC	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	363
BmrI	ACTGGG	1 cut(s)	519
BmsI	GCATC	4 cut(s)	652, 1015, 1042, 1403
BmuI	ACTGGG	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	1127
BsaJI	CCNNGG	1 cut(s)	1257
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	1257
BseGI	GGATG	4 cut(s)	667, 1057, 1077, 1185
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	1 cut(s)	1094
BseSI	GKGCMC	1 cut(s)	136
BshFI	GGCC	2 cut(s)	756, 1339
BsiHKAI	GWGCWC	2 cut(s)	457, 967
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	2, 1343
BsnI	GGCC	2 cut(s)	756, 1339
Bsp1286I	GDGCHC	3 cut(s)	136, 457, 967
Bsp143I	GATC	3 cut(s)	1014, 1320, 1342
Bsp1720I	GCTNAGC	1 cut(s)	1127
BspANI	GGCC	2 cut(s)	756, 1339
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	625
BspPI	GGATC	2 cut(s)	1022, 1315
BspTI	CTTAAG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	1257
BssMI	GATC	3 cut(s)	1014, 1320, 1342
BssT1I	CCWWGG	1 cut(s)	1257
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	7 cut(s)	27, 183, 410, 597, 883, 938, 1166
BstAFI	CTTAAG	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	573
BstC8I	GCNNGC	3 cut(s)	489, 1087, 1308
BstDEI	CTNAG	3 cut(s)	283, 550, 1127
BstF5I	GGATG	4 cut(s)	667, 1057, 1077, 1185
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	3 cut(s)	1017, 1323, 1345
BstMAI	GTCTC	2 cut(s)	2, 1343
BstMBI	GATC	3 cut(s)	1014, 1320, 1342
BstMWI	GCNNNNNNNGC	3 cut(s)	363, 573, 753
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	955, 1391
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	1398
BstSLI	GKGCMC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	1014
BstXI	CCANNNNNNTGG	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	1014
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	756, 1339
BtsCI	GGATG	4 cut(s)	667, 1057, 1077, 1185
BtsIMutI	CAGTG	3 cut(s)	415, 457, 879
Cac8I	GCNNGC	3 cut(s)	489, 1087, 1308
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	864
CviAII	CATG	9 cut(s)	79, 235, 400, 505, 564, 610, 952, 1226, 1388
DdeI	CTNAG	3 cut(s)	283, 550, 1127
DpnI	GATC	3 cut(s)	1016, 1322, 1344
DpnII	GATC	3 cut(s)	1014, 1320, 1342
DraI	TTTAAA	2 cut(s)	118, 298
EaeI	YGGCCR	1 cut(s)	754
Ecl136II	GAGCTC	1 cut(s)	965
Eco130I	CCWWGG	1 cut(s)	1257
Eco147I	AGGCCT	1 cut(s)	1339
Eco24I	GRGCYC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	864
Eco47III	AGCGCT	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	965
Eco57I	CTGAAG	1 cut(s)	921
EcoICRI	GAGCTC	1 cut(s)	965
EcoRI	GAATTC	2 cut(s)	414, 474
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	1257
EcoT38I	GRGCYC	1 cut(s)	967
ErhI	CCWWGG	1 cut(s)	1257
FaeI	CATG	9 cut(s)	82, 238, 403, 508, 567, 613, 955, 1229, 1391
FalI	AAGNNNNNCTT	6 cut(s)	374, 406, 471, 503, 1184, 1216
FatI	CATG	9 cut(s)	78, 234, 399, 504, 563, 609, 951, 1225, 1387
FokI	GGATG	4 cut(s)	674, 1064, 1084, 1192
FriOI	GRGCYC	1 cut(s)	967
FspBI	CTAG	3 cut(s)	164, 887, 1346
GlaI	GCGC	1 cut(s)	486
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	756, 1339
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	9 cut(s)	82, 238, 403, 508, 567, 613, 955, 1229, 1391
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	1296
HinfI	GANTC	4 cut(s)	10, 16, 82, 804
HphI	GGTGA	4 cut(s)	319, 809, 1273, 1304
Hpy166II	GTNNAC	2 cut(s)	265, 406
Hpy188I	TCNGA	3 cut(s)	15, 52, 255
Hpy188III	TCNNGA	6 cut(s)	36, 235, 391, 479, 972, 1346
Hpy8I	GTNNAC	2 cut(s)	265, 406
HpyAV	CCTTC	6 cut(s)	671, 794, 855, 896, 1189, 1377
HpyCH4III	ACNGT	7 cut(s)	27, 183, 410, 597, 883, 938, 1166
HpyCH4IV	ACGT	2 cut(s)	426, 1034
HpyCH4V	TGCA	9 cut(s)	30, 399, 567, 576, 672, 852, 1143, 1276, 1394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	363, 573, 753
HpyF3I	CTNAG	3 cut(s)	283, 550, 1127
HpySE526I	ACGT	2 cut(s)	426, 1034
Hsp92II	CATG	9 cut(s)	82, 238, 403, 508, 567, 613, 955, 1229, 1391
HspAI	GCGC	1 cut(s)	485
Kzo9I	GATC	3 cut(s)	1014, 1320, 1342
LmnI	GCTCC	1 cut(s)	1123
LweI	GCATC	4 cut(s)	652, 1015, 1042, 1403
MaeI	CTAG	3 cut(s)	164, 887, 1346
MaeII	ACGT	2 cut(s)	426, 1034
MaeIII	GTNAC	7 cut(s)	65, 214, 325, 640, 715, 820, 925
MalI	GATC	3 cut(s)	1016, 1322, 1344
MboI	GATC	3 cut(s)	1014, 1320, 1342
MboII	GAAGA	1 cut(s)	479
MflI	RGATCY	1 cut(s)	1014
MhlI	GDGCHC	3 cut(s)	136, 457, 967
MlsI	TGGCCA	1 cut(s)	756
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	229
Mox20I	TGGCCA	1 cut(s)	756
MroXI	GAANNNNTTC	3 cut(s)	230, 474, 1370
MscI	TGGCCA	1 cut(s)	756
MslI	CAYNNNNRTG	2 cut(s)	221, 568
Msp20I	TGGCCA	1 cut(s)	756
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	3 cut(s)	363, 573, 753
NdeII	GATC	3 cut(s)	1014, 1320, 1342
NlaIII	CATG	9 cut(s)	82, 238, 403, 508, 567, 613, 955, 1229, 1391
NlaIV	GGNNCC	1 cut(s)	625
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	4 cut(s)	214, 325, 715, 925
NspI	RCATGY	2 cut(s)	955, 1391
PacI	TTAATTAA	1 cut(s)	735
PagI	TCATGA	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	1339
PdmI	GAANNNNTTC	3 cut(s)	230, 474, 1370
PfeI	GAWTC	3 cut(s)	16, 82, 804
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PshBI	ATTAAT	1 cut(s)	735
PsiI	TTATAA	1 cut(s)	839
Psp124BI	GAGCTC	1 cut(s)	967
Psp1406I	AACGTT	1 cut(s)	1034
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	625
PspPI	GGNCC	1 cut(s)	864
PsuI	RGATCY	1 cut(s)	1014
RseI	CAYNNNNRTG	2 cut(s)	221, 568
SacI	GAGCTC	1 cut(s)	967
Sau3AI	GATC	3 cut(s)	1014, 1320, 1342
Sau96I	GGNCC	1 cut(s)	864
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	3 cut(s)	136, 457, 967
SfaNI	GCATC	4 cut(s)	652, 1015, 1042, 1403
SfcI	CTRYAG	1 cut(s)	1398
SinI	GGWCC	1 cut(s)	864
SmiMI	CAYNNNNRTG	2 cut(s)	221, 568
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SseBI	AGGCCT	1 cut(s)	1339
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	3 cut(s)	164, 887, 1346
SstI	GAGCTC	1 cut(s)	967
StuI	AGGCCT	1 cut(s)	1339
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	1257
TaaI	ACNGT	7 cut(s)	27, 183, 410, 597, 883, 938, 1166
TaiI	ACGT	2 cut(s)	429, 1037
TaqI	TCGA	2 cut(s)	498, 1009
TfiI	GAWTC	3 cut(s)	16, 82, 804
TscAI	CASTG	3 cut(s)	415, 457, 886
TseFI	GTSAC	4 cut(s)	214, 325, 715, 925
Tsp45I	GTSAC	4 cut(s)	214, 325, 715, 925
TspGWI	ACGGA	1 cut(s)	1364
TspRI	CASTG	3 cut(s)	415, 457, 886
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	864
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	2 cut(s)	414, 474
XbaI	TCTAGA	1 cut(s)	1345
XceI	RCATGY	2 cut(s)	955, 1391
XmnI	GAANNNNTTC	3 cut(s)	230, 474, 1370
XspI	CTAG	3 cut(s)	164, 887, 1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.