AT2G15780

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000410
Physical Location & Seq
Reverse (-)
6873417 .. 6874784
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15780.1

Sequence Viewer

Length: 774 bp
ATGGTACACTCTCGTTTTTTAAACGTTGTTTTAGTCCTAGTGACCATTGCTTCCATATTCTCCACATTTGCCGAGGCCAATAGGGGCTTTGGGTGGGGTTGGGGTGGACACTCCAACAATTCAAGTGGTTCAGGTTCAAACTCGAGGTCCGGATGGGGTTGGGGTTGGGGTCAAGGCTCCAACTATTCAAGTGGTTCAGCTTCAACCCCAGGGTCAGGATGGGGTTTCGGCTCTAGTCGAAACGGCTCAGGCTGGGGTTGGGGTTGGGGCGGGGTTCCCAACAATACACACAGCTCAGGGTCTGGCGGCTCGGGTTGGGGCATGGGGCCTAACAACAATTACAGCTCGGGATCTGGCGGCTCGGGTTCGGGCTGGGGATATGGAGGTCATTCAAAAAACTATAATGCCACCTACAATGGACCTAGAAAGATCATAGTCGGTGGAGACAAAGAGTGGACTTATGGATTCAATTACGCTGACTGGGCTTCTAAGACTGCTCCATTCTTTCTCAATGACATACTTGTTTTCAAATACAACCCACCAGCCCCGTTCACGCACAGCGTTTACTTGCTTCCGAACCCATCGAGTTATGAAAAGTGTGACGTGAAGAAAGGCAAAATGATTGCGTCTCCGAAGCAAGGTGCTGGAAAAGGCTTTGAGTTTGTTCTAAAACAGATGAAGCCTTACTACATTTCGTGTGGCGAGCATGACGGTGCTCATTGCAGCAATGGTACCATGAAGTTCACCGTCATGCCCATGCTACCCCGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

257

Amino Acids

27.4

Weight (kDa)

9.54

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 731
AccIII TCCGGA 1 cut(s) 149
AciI CCGC 3 cut(s) 270, 306, 357
AclI AACGTT 1 cut(s) 24
AclWI GGATC 1 cut(s) 358
AfaI GTAC 2 cut(s) 6, 733
AfiI CCNNNNNNNGG 2 cut(s) 215, 638
AgsI TTSAA 7 cut(s) 123, 138, 189, 204, 393, 469, 529
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 3 cut(s) 200, 294, 345
AluI AGCT 3 cut(s) 200, 294, 345
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 438, 633
AlwI GGATC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 4 cut(s) 142, 310, 346, 361
Aor13HI TCCGGA 1 cut(s) 149
AoxI GGCC 2 cut(s) 75, 326
ApeKI GCWGC 1 cut(s) 723
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp718I GGTACC 1 cut(s) 731
AspS9I GGNCC 3 cut(s) 147, 326, 419
AsuHPI GGTGA 1 cut(s) 736
AvaI CYCGRG 4 cut(s) 142, 310, 346, 361
AvaII GGWCC 2 cut(s) 147, 419
BanI GGYRCC 1 cut(s) 731
BarI GAAGNNNNNNTAC 2 cut(s) 671, 703
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 1 cut(s) 735
BccI CCATC 3 cut(s) 147, 213, 589
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 438, 633
BfaI CTAG 3 cut(s) 38, 234, 423
BisI GCNGC 3 cut(s) 307, 358, 724
BlsI GCNGC 3 cut(s) 308, 359, 725
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 2 cut(s) 147, 419
BmeT110I CYCGRG 4 cut(s) 142, 310, 346, 361
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 3 cut(s) 147, 326, 419
BmiI GGNNCC 4 cut(s) 178, 276, 327, 733
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 490
BmuI ACTGGG 1 cut(s) 490
Bpu10I CCTNAGC 2 cut(s) 247, 295
BsaJI CCNNGG 3 cut(s) 72, 208, 209
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 638
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 3 cut(s) 45, 718, 733
BseAI TCCGGA 1 cut(s) 149
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 72, 208, 209
BseGI GGATG 2 cut(s) 158, 224
BseLI CCNNNNNNNGG 2 cut(s) 215, 638
BseMI GCAATG 3 cut(s) 45, 718, 733
BseMII CTCAG 2 cut(s) 261, 309
BseNI ACTGG 1 cut(s) 485
BseXI GCAGC 1 cut(s) 735
BseYI CCCAGC 2 cut(s) 252, 372
BshFI GGCC 2 cut(s) 77, 328
BshNI GGYRCC 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 4 cut(s) 142, 310, 346, 361
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 215, 638
BsmAI GTCTC 2 cut(s) 438, 633
BsmBI CGTCTC 1 cut(s) 633
BsnI GGCC 2 cut(s) 77, 328
BsoBI CYCGRG 4 cut(s) 142, 310, 346, 361
Bsp1286I GDGCHC 1 cut(s) 718
Bsp13I TCCGGA 1 cut(s) 149
Bsp143I GATC 2 cut(s) 350, 429
BspACI CCGC 3 cut(s) 270, 306, 357
BspANI GGCC 2 cut(s) 77, 328
BspCNI CTCAG 2 cut(s) 260, 308
BspEI TCCGGA 1 cut(s) 149
BspLI GGNNCC 4 cut(s) 178, 276, 327, 733
BspPI GGATC 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 3 cut(s) 45, 718, 733
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 72, 208, 209
BssMI GATC 2 cut(s) 350, 429
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 713, 748
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 3 cut(s) 247, 295, 489
BstF5I GGATG 2 cut(s) 158, 224
BstKTI GATC 2 cut(s) 353, 432
BstMAI GTCTC 2 cut(s) 438, 633
BstMBI GATC 2 cut(s) 350, 429
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 735
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 2 cut(s) 77, 328
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 2 cut(s) 158, 224
Cac8I GCNNGC 1 cut(s) 704
CaiI CAGNNNCTG 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 147, 326, 419
CseI GACGC 1 cut(s) 615
Csp6I GTAC 2 cut(s) 5, 732
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 5 cut(s) 322, 707, 736, 751, 757
CviQI GTAC 2 cut(s) 5, 732
DdeI CTNAG 3 cut(s) 247, 295, 489
DpnI GATC 2 cut(s) 352, 431
DpnII GATC 2 cut(s) 350, 429
DraI TTTAAA 1 cut(s) 21
Eco47I GGWCC 2 cut(s) 147, 419
Eco88I CYCGRG 4 cut(s) 142, 310, 346, 361
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 5 cut(s) 325, 710, 739, 754, 760
FatI CATG 5 cut(s) 321, 706, 735, 750, 756
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 3 cut(s) 307, 358, 724
FokI GGATG 2 cut(s) 165, 231
Fsp4HI GCNGC 3 cut(s) 307, 358, 724
FspBI CTAG 3 cut(s) 38, 234, 423
GluI GCNGC 3 cut(s) 307, 358, 724
GsaI CCCAGC 2 cut(s) 256, 376
HaeIII GGCC 2 cut(s) 77, 328
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 615
Hin1II CATG 5 cut(s) 325, 710, 739, 754, 760
HinfI GANTC 1 cut(s) 465
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 736
Hpy166II GTNNAC 6 cut(s) 7, 107, 456, 552, 565, 744
Hpy188I TCNGA 2 cut(s) 576, 633
Hpy188III TCNNGA 3 cut(s) 150, 216, 348
Hpy8I GTNNAC 6 cut(s) 7, 107, 456, 552, 565, 744
HpyCH4III ACNGT 2 cut(s) 713, 748
HpyCH4IV ACGT 2 cut(s) 24, 603
HpyCH4V TGCA 1 cut(s) 723
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 3 cut(s) 247, 295, 489
HpySE526I ACGT 2 cut(s) 24, 603
Hsp92II CATG 5 cut(s) 325, 710, 739, 754, 760
Kpn2I TCCGGA 1 cut(s) 149
KpnI GGTACC 1 cut(s) 735
Kzo9I GATC 2 cut(s) 350, 429
LmnI GCTCC 2 cut(s) 182, 502
Lsp1109I GCAGC 1 cut(s) 735
MaeI CTAG 3 cut(s) 38, 234, 423
MaeII ACGT 2 cut(s) 24, 603
MaeIII GTNAC 2 cut(s) 40, 599
MalI GATC 2 cut(s) 352, 431
MboI GATC 2 cut(s) 350, 429
MboII GAAGA 1 cut(s) 619
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 3 cut(s) 118, 337, 469
MmeI TCCRAC 2 cut(s) 138, 204
MnlI CCTC 3 cut(s) 67, 138, 377
MroI TCCGGA 1 cut(s) 149
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 3 cut(s) 711, 749, 755
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeII GATC 2 cut(s) 350, 429
NlaIII CATG 5 cut(s) 325, 710, 739, 754, 760
NlaIV GGNNCC 4 cut(s) 178, 276, 327, 733
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 40, 599
PaeR7I CTCGAG 1 cut(s) 142
PasI CCCWGGG 1 cut(s) 209
PfeI GAWTC 1 cut(s) 465
PkrI GCNGC 3 cut(s) 308, 359, 725
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 208
PspFI CCCAGC 2 cut(s) 252, 372
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 4 cut(s) 178, 276, 327, 733
PspPI GGNCC 3 cut(s) 147, 326, 419
PspXI VCTCGAGB 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 2 cut(s) 6, 733
RsaNI GTAC 2 cut(s) 5, 732
RseI CAYNNNNRTG 3 cut(s) 711, 749, 755
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 307, 358, 724
Sau3AI GATC 2 cut(s) 350, 429
Sau96I GGNCC 3 cut(s) 147, 326, 419
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 718
Sfr274I CTCGAG 1 cut(s) 142
SinI GGWCC 2 cut(s) 147, 419
SlaI CTCGAG 1 cut(s) 142
SmiMI CAYNNNNRTG 3 cut(s) 711, 749, 755
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 3 cut(s) 118, 337, 469
SsiI CCGC 3 cut(s) 270, 306, 357
SspMI CTAG 3 cut(s) 38, 234, 423
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 713, 748
TaiI ACGT 2 cut(s) 27, 606
TaqI TCGA 3 cut(s) 143, 238, 584
TasI AATT 3 cut(s) 118, 337, 469
TauI GCSGC 2 cut(s) 309, 360
TfiI GAWTC 1 cut(s) 465
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseFI GTSAC 2 cut(s) 40, 599
TseI GCWGC 1 cut(s) 723
Tsp45I GTSAC 2 cut(s) 40, 599
TspDTI ATGAA 3 cut(s) 606, 692, 752
VpaK11BI GGWCC 2 cut(s) 147, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 142
XspI CTAG 3 cut(s) 38, 234, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.