RLG00000014565

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000410
Physical Location & Seq
Forward (+)
54806336 .. 54807058
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014565

Sequence Viewer

Length: 516 bp
ATGGCTTCCATGTTTGCTCAAGCCCTTTTTGCAATGCTGCTAATTGCTTCAATGGTGGCACTTGGCACAGCCAACAAGGATTGGCAGCAGCGGAACTACACTGGCTGGGGTTTCAACCATGGTCCATATCACCTCAACAAGACAGAAGGACCCAACAAGATCATTGTTGGTGGCTCCGAAAACTGGCATTATGGTTTTAACTATGCAGATTGGTCTCTGAAAAATGCGTCATTTTACGTCCACGACACCCTGGTTTTCAAGTATGATCCGCCAAACAACACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATACACTGCGACTTAAGCAAGGCCAAGATGGTGGGAAGTCCAACACAAGGAGGTGGAAACGGCTTTGAGTTTGTGCTCAAGAGCTCGCGGCCTTACTACTTTGCTTGTGGCGAGCACAATGGTACACATTGTAAAGACGGAATGATGAGGTTCTTCGTGTTCCCAAAGCTTCGCGGCTGGCATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

172

Amino Acids

19.48

Weight (kDa)

8.94

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 415, 501
AciI CCGC 4 cut(s) 91, 269, 415, 501
AclWI GGATC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 302, 451
AfiI CCNNNNNNNGG 2 cut(s) 183, 374
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 51, 115, 259
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 3 cut(s) 324, 411, 496
AluI AGCT 3 cut(s) 324, 411, 496
Alw21I GWGCWC 3 cut(s) 405, 413, 444
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 260
AoxI GGCC 2 cut(s) 348, 416
ApeKI GCWGC 3 cut(s) 37, 85, 88
AspS9I GGNCC 2 cut(s) 122, 149
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 122, 149
BanII GRGCYC 1 cut(s) 413
Bbv12I GWGCWC 3 cut(s) 405, 413, 444
BbvI GCAGC 3 cut(s) 24, 97, 100
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 5 cut(s) 38, 86, 89, 416, 502
BlsI GCNGC 5 cut(s) 39, 87, 90, 417, 503
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 2 cut(s) 122, 149
BmgT120I GGNCC 2 cut(s) 122, 149
BmiI GGNNCC 2 cut(s) 151, 175
BmrFI CCNGG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 118, 249
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 374
Bse1I ACTGG 2 cut(s) 106, 188
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 118, 249
BseLI CCNNNNNNNGG 2 cut(s) 183, 374
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 106, 188
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 24, 97, 100
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 415, 501
BshFI GGCC 2 cut(s) 350, 418
BsiHKAI GWGCWC 3 cut(s) 405, 413, 444
BslI CCNNNNNNNGG 2 cut(s) 183, 374
BsmAI GTCTC 1 cut(s) 219
BsnI GGCC 2 cut(s) 350, 418
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 3 cut(s) 405, 413, 444
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 2 cut(s) 159, 265
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 4 cut(s) 91, 269, 415, 501
BspANI GGCC 2 cut(s) 350, 418
BspFNI CGCG 2 cut(s) 415, 501
BspLI GGNNCC 2 cut(s) 151, 175
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 2 cut(s) 106, 188
BssECI CCNNGG 2 cut(s) 118, 249
BssMI GATC 2 cut(s) 159, 265
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 413, 440, 506
BstDSI CCRYGG 1 cut(s) 118
BstFNI CGCG 2 cut(s) 415, 501
BstKTI GATC 2 cut(s) 162, 268
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 159, 265
BstMWI GCNNNNNNNGC 2 cut(s) 29, 342
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 249
BstUI CGCG 2 cut(s) 415, 501
BstV1I GCAGC 3 cut(s) 24, 97, 100
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BsuRI GGCC 2 cut(s) 350, 418
BtgI CCRYGG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 99, 331
Cac8I GCNNGC 3 cut(s) 413, 440, 506
Cfr13I GGNCC 2 cut(s) 122, 149
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 301, 450
CviAII CATG 3 cut(s) 10, 119, 304
CviQI GTAC 2 cut(s) 301, 450
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
DraIII CACNNNGTG 1 cut(s) 298
EciI GGCGGA 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 122, 149
Eco53kI GAGCTC 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 3 cut(s) 13, 122, 307
FaiI YATR 8 cut(s) 11, 120, 127, 192, 204, 264, 305, 329
FatI CATG 3 cut(s) 9, 118, 303
Fnu4HI GCNGC 5 cut(s) 38, 86, 89, 416, 502
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 5 cut(s) 38, 86, 89, 416, 502
GluI GCNGC 5 cut(s) 38, 86, 89, 416, 502
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 2 cut(s) 350, 418
HgaI GACGC 1 cut(s) 216
Hin1II CATG 3 cut(s) 13, 122, 307
HindIII AAGCTT 1 cut(s) 494
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 241, 301, 452
Hpy188I TCNGA 2 cut(s) 178, 219
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 3 cut(s) 241, 301, 452
HpyAV CCTTC 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 32, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 342
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 13, 122, 307
Kzo9I GATC 2 cut(s) 159, 265
LmnI GCTCC 2 cut(s) 179, 321
LpnPI CCDG 6 cut(s) 87, 91, 169, 236, 263, 490
Lsp1109I GCAGC 3 cut(s) 24, 97, 100
MaeII ACGT 1 cut(s) 237
MalI GATC 2 cut(s) 161, 267
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 1 cut(s) 472
MhlI GDGCHC 3 cut(s) 405, 413, 444
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 143, 297, 300, 371, 468
MseI TTAA 3 cut(s) 198, 341, 514
MspA1I CMGCKG 1 cut(s) 91
MspCI CTTAAG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MvnI CGCG 2 cut(s) 415, 501
MwoI GCNNNNNNNGC 2 cut(s) 29, 342
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 159, 265
NlaIII CATG 3 cut(s) 13, 122, 307
NlaIV GGNNCC 2 cut(s) 151, 175
NspI RCATGY 1 cut(s) 307
PkrI GCNGC 5 cut(s) 39, 87, 90, 417, 503
PpuMI RGGWCCY 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 151, 175
PspPI GGNCC 2 cut(s) 122, 149
PspPPI RGGWCCY 1 cut(s) 149
RsaI GTAC 2 cut(s) 302, 451
RsaNI GTAC 2 cut(s) 301, 450
SacI GAGCTC 1 cut(s) 413
SaqAI TTAA 3 cut(s) 198, 341, 514
SatI GCNGC 5 cut(s) 38, 86, 89, 416, 502
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 2 cut(s) 122, 149
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 3 cut(s) 405, 413, 444
SetI ASST 9 cut(s) 135, 240, 289, 318, 326, 382, 413, 479, 498
SinI GGWCC 2 cut(s) 122, 149
SmlI CTYRAG 3 cut(s) 18, 340, 404
SmoI CTYRAG 3 cut(s) 18, 340, 404
Sse9I AATT 1 cut(s) 42
SsiI CCGC 4 cut(s) 91, 269, 415, 501
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 240
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 300
TauI GCSGC 2 cut(s) 418, 504
Tru1I TTAA 3 cut(s) 198, 341, 514
Tru9I TTAA 3 cut(s) 198, 341, 514
TscAI CASTG 2 cut(s) 106, 338
TseI GCWGC 3 cut(s) 37, 85, 88
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 2 cut(s) 106, 338
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 122, 149
XceI RCATGY 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.