Rorug06G0354800

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000410
Physical Location & Seq
Reverse (-)
50257590 .. 50260471
2882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0354800.1

Sequence Viewer

Length: 735 bp
ATGGGAGAGAACAACAGCGGCACGGAGGTTCCGGCGAACCAGACGATCTACATCAACAACCTGAACGAGAAAATCAAGCTCGACGAATTGAAGAAGACGCTGCACGCCATGTTCTCGCAGTTCGGCAAGGTTCTGGATGTGCTGGCCTTCAAGACGCTCAAGCACAAAGGTCAAGCTTGGGTCGTCTTCGAGGACGTCTCTTCTGCCACCAATGCCATTCGCCAAATGCAGAGCTTCCCTTTCTATGACAAGCCCATGAAAATACAATATGCCAAGACGAAATCAGATATAATAGCAAAGGCTGATGGTACGTTTGTTCCACGTGAAAGACGAAAAAGGCATGAGGAGAAGGGGAAAAAACGGAAAGAGCAGCAGGATGCTATCCAAGCTGGAATGGGTCTCAATCCTGCTTATCCTGGTGCCTATGGTGGAGCACCTCCGCTCTCCCAAATACCATATCCTGGTGGTGTGAAATCTATGGTGCCTGAGGCCCCTGCTCCACCAAATAATATTCTTTTTGTTCAGAATCTTCCTCACGAGGCAACTTCTGTGATGCTGCAAATGCTCTTCTGTCAATACCCTGGTTTTAAGGAGGTTAGAATGGTGGAAGCTAAGCCAGGTATTGCTTTTGTGGAATACGAAAATGAGATGCAATCATCAATGGCAATGCAGAACCTCCAAGCTTTTAAGGTGACACCGCAGAATTCAATGTTGATCACCTACGCAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

244

Amino Acids

27.38

Weight (kDa)

9.37

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 16 - 86 3.4e-10 RNA recognition motif
RRM_5 PF13893 164 - 233 9.5e-06 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1 PF00076 172 - 231 3.9e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 2 cut(s) 419, 481
AccB7I CCANNNNNTGG 1 cut(s) 461
AccBSI CCGCTC 1 cut(s) 442
AciI CCGC 3 cut(s) 18, 440, 698
AcsI RAATTY 1 cut(s) 703
AcvI CACGTG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 3 cut(s) 91, 151, 708
AjnI CCWGG 4 cut(s) 415, 460, 580, 616
AluBI AGCT 6 cut(s) 79, 176, 234, 389, 611, 683
AluI AGCT 6 cut(s) 79, 176, 234, 389, 611, 683
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 202, 404
AoxI GGCC 2 cut(s) 144, 489
ApeKI GCWGC 3 cut(s) 100, 370, 556
ApoI RAATTY 1 cut(s) 703
AspS9I GGNCC 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 703, 709
AxyI CCTNAGG 1 cut(s) 486
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BanI GGYRCC 2 cut(s) 419, 481
BauI CACGAG 1 cut(s) 536
BbrPI CACGTG 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 101, 178
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 3 cut(s) 87, 382, 543
BccI CCATC 1 cut(s) 299
BciT130I CCWGG 4 cut(s) 417, 462, 582, 618
BclI TGATCA 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 202, 404
BisI GCNGC 4 cut(s) 19, 101, 371, 557
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 4 cut(s) 20, 102, 372, 558
Bme1390I CCNGG 4 cut(s) 417, 462, 582, 618
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 4 cut(s) 30, 421, 483, 492
BmrFI CCNGG 4 cut(s) 417, 462, 582, 618
BmsI GCATC 3 cut(s) 367, 543, 639
BpiI GAAGAC 2 cut(s) 101, 178
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu1102I GCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 4 cut(s) 417, 462, 582, 618
BseDI CCNNGG 1 cut(s) 580
BseGI GGATG 2 cut(s) 142, 382
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 1 cut(s) 477
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 3 cut(s) 87, 382, 543
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 2 cut(s) 146, 491
BshNI GGYRCC 2 cut(s) 419, 481
BsiHKAI GWGCWC 1 cut(s) 436
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 202, 404
BsmBI CGTCTC 1 cut(s) 202
BsnI GGCC 2 cut(s) 146, 491
Bso31I GGTCTC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 2 cut(s) 45, 714
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 3 cut(s) 18, 440, 698
BspANI GGCC 2 cut(s) 146, 491
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 4 cut(s) 30, 421, 483, 492
BspQI GCTCTTC 1 cut(s) 572
BspT107I GGYRCC 2 cut(s) 419, 481
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 672
BssECI CCNNGG 1 cut(s) 580
BssMI GATC 2 cut(s) 45, 714
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 4 cut(s) 417, 462, 582, 618
Bst6I CTCTTC 2 cut(s) 205, 572
BstACI GRCGYC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 105, 144
BstDEI CTNAG 2 cut(s) 486, 612
BstF5I GGATG 2 cut(s) 142, 382
BstKTI GATC 2 cut(s) 48, 717
BstMAI GTCTC 2 cut(s) 202, 404
BstMBI GATC 2 cut(s) 45, 714
BstMWI GCNNNNNNNGC 3 cut(s) 212, 386, 562
BstNI CCWGG 4 cut(s) 417, 462, 582, 618
BstSCI CCNGG 4 cut(s) 415, 460, 580, 616
BstV1I GCAGC 3 cut(s) 87, 382, 543
BstV2I GAAGAC 2 cut(s) 101, 178
Bsu36I CCTNAGG 1 cut(s) 486
BsuRI GGCC 2 cut(s) 146, 491
BtsCI GGATG 2 cut(s) 142, 382
Cac8I GCNNGC 2 cut(s) 105, 144
Cfr13I GGNCC 1 cut(s) 490
CseI GACGC 2 cut(s) 106, 163
Csp6I GTAC 1 cut(s) 309
CviAII CATG 3 cut(s) 109, 256, 341
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 486, 612
DpnI GATC 2 cut(s) 47, 716
DpnII GATC 2 cut(s) 45, 714
Eam1104I CTCTTC 2 cut(s) 205, 572
EarI CTCTTC 2 cut(s) 205, 572
Eco31I GGTCTC 1 cut(s) 404
Eco72I CACGTG 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 490
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 4 cut(s) 415, 460, 580, 616
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 3 cut(s) 112, 259, 344
FaiI YATR 9 cut(s) 110, 246, 257, 270, 290, 342, 426, 457, 479
FatI CATG 3 cut(s) 108, 255, 340
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 4 cut(s) 19, 101, 371, 557
FokI GGATG 2 cut(s) 149, 389
Fsp4HI GCNGC 4 cut(s) 19, 101, 371, 557
GluI GCNGC 4 cut(s) 19, 101, 371, 557
HaeIII GGCC 2 cut(s) 146, 491
HapII CCGG 1 cut(s) 32
HgaI GACGC 2 cut(s) 106, 163
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 3 cut(s) 112, 259, 344
HindIII AAGCTT 2 cut(s) 174, 681
HinfI GANTC 1 cut(s) 526
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 703, 709
Hpy188I TCNGA 2 cut(s) 286, 525
Hpy188III TCNNGA 3 cut(s) 134, 151, 536
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 157, 343
HpyCH4IV ACGT 3 cut(s) 195, 311, 322
HpyCH4V TGCA 5 cut(s) 103, 229, 559, 652, 670
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 386, 562
HpyF3I CTNAG 2 cut(s) 486, 612
HpySE526I ACGT 3 cut(s) 195, 311, 322
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 3 cut(s) 112, 259, 344
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 2 cut(s) 45, 714
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 2 cut(s) 431, 502
Lsp1109I GCAGC 3 cut(s) 87, 382, 543
LweI GCATC 3 cut(s) 367, 543, 639
MaeII ACGT 3 cut(s) 195, 311, 322
MaeIII GTNAC 1 cut(s) 691
MalI GATC 2 cut(s) 47, 716
MbiI CCGCTC 1 cut(s) 442
MboI GATC 2 cut(s) 45, 714
MboII GAAGA 6 cut(s) 103, 106, 178, 192, 521, 559
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 2 cut(s) 86, 703
MnlI CCTC 9 cut(s) 19, 184, 337, 447, 481, 532, 543, 586, 686
MseI TTAA 2 cut(s) 588, 687
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 4 cut(s) 417, 462, 582, 618
MvaI CCWGG 4 cut(s) 417, 462, 582, 618
MwoI GCNNNNNNNGC 3 cut(s) 212, 386, 562
NdeII GATC 2 cut(s) 45, 714
NlaIII CATG 3 cut(s) 112, 259, 344
NlaIV GGNNCC 4 cut(s) 30, 421, 483, 492
NmuCI GTSAC 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 572
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PfeI GAWTC 1 cut(s) 526
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 4 cut(s) 20, 102, 372, 558
PmaCI CACGTG 1 cut(s) 323
PmlI CACGTG 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 323
Psp6I CCWGG 4 cut(s) 415, 460, 580, 616
PspCI CACGTG 1 cut(s) 323
PspGI CCWGG 4 cut(s) 415, 460, 580, 616
PspN4I GGNNCC 4 cut(s) 30, 421, 483, 492
PspPI GGNCC 1 cut(s) 490
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 2 cut(s) 588, 687
SatI GCNGC 4 cut(s) 19, 101, 371, 557
Sau3AI GATC 2 cut(s) 45, 714
Sau96I GGNCC 1 cut(s) 490
ScrFI CCNGG 4 cut(s) 417, 462, 582, 618
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 3 cut(s) 367, 543, 639
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 86, 703
SsiI CCGC 3 cut(s) 18, 440, 698
SspI AATATT 1 cut(s) 511
StyD4I CCNGG 4 cut(s) 415, 460, 580, 616
TaiI ACGT 3 cut(s) 198, 314, 325
TaqI TCGA 2 cut(s) 81, 189
TasI AATT 2 cut(s) 86, 703
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 2 cut(s) 588, 687
Tru9I TTAA 2 cut(s) 588, 687
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 3 cut(s) 100, 370, 556
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 2 cut(s) 38, 376
Van91I CCANNNNNTGG 1 cut(s) 461
XapI RAATTY 1 cut(s) 703
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.