Rroxscaffold_7G00206400

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000410
Physical Location & Seq
Reverse (-)
56184039 .. 56185055
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206400.1

Sequence Viewer

Length: 516 bp
ATGGGTTCCAAGTTTGCAGAAGCACTTTTTGCAATACTTCTAATTGCTTCAATGGTAGCAGTTAGCACATCCAACAAGGATTGGCAGCAGGGGAACTACACTGGCTGGGGTTTCAACCGTGGTCCATATCACCTCAACAAGACAGAAGGACCCAACAAGATCATTGTTGGTGGCTCCGAAAATTGGCATTATGGTTTTAACTATGCAGATTGGTCTCTTAAAAATGCCTCATTTTACGTCCACGACACTCTAGTTTTCAAGTATGATCCACCAACCAACAGCACACGTCCTCACAGCGTGTACTTGCTACCAAACCTCTGGAGCTTCATAAACTGCGACTTAAGCCACGCCAAGATGGTGGGAAGTCCGACACAAGGAGGCGGAAACGGCTTTGAGTTTGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGCGAGCATGGTGGTGCTCATTGTAAAGATGGAATGATGAGGTTCTTCGTCTTCCCAAAGCTTCGCGGCTGGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

171

Amino Acids

19.38

Weight (kDa)

8.72

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 501
AciI CCGC 2 cut(s) 381, 501
AclWI GGATC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 183, 374
AflII CTTAAG 1 cut(s) 340
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 51, 115, 259
AjiI CACGTC 1 cut(s) 287
AluBI AGCT 3 cut(s) 324, 411, 496
AluI AGCT 3 cut(s) 324, 411, 496
Alw21I GWGCWC 2 cut(s) 405, 454
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 85, 415
AspS9I GGNCC 2 cut(s) 122, 149
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 122, 149
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 405, 454
BbvI GCAGC 2 cut(s) 97, 427
BccI CCATC 2 cut(s) 349, 458
BceAI ACGGC 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 3 cut(s) 86, 416, 502
BlsI GCNGC 3 cut(s) 87, 417, 503
Bme18I GGWCC 2 cut(s) 122, 149
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 122, 149
BmiI GGNNCC 3 cut(s) 7, 151, 175
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 374
Bse1I ACTGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 183, 374
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 2 cut(s) 97, 427
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 501
BsiHKAI GWGCWC 2 cut(s) 405, 454
BslI CCNNNNNNNGG 2 cut(s) 183, 374
BsmAI GTCTC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 405, 454
Bsp143I GATC 2 cut(s) 159, 265
BspACI CCGC 2 cut(s) 381, 501
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 7, 151, 175
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 159, 265
Bst4CI ACNGT 1 cut(s) 119
BstAFI CTTAAG 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 413, 440, 506
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 501
BstKTI GATC 2 cut(s) 162, 268
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 2 cut(s) 159, 265
BstMWI GCNNNNNNNGC 3 cut(s) 29, 342, 387
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 97, 427
BstV2I GAAGAC 1 cut(s) 478
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BtgI CCRYGG 1 cut(s) 118
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 413, 440, 506
Cfr13I GGNCC 2 cut(s) 122, 149
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 443
CviJI RGCY 9 cut(s) 105, 174, 324, 345, 390, 411, 418, 496, 504
CviKI_1 RGCY 9 cut(s) 105, 174, 324, 345, 390, 411, 418, 496, 504
CviQI GTAC 1 cut(s) 301
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
DraIII CACNNNGTG 1 cut(s) 298
EciI GGCGGA 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 122, 149
EcoO109I RGGNCCY 1 cut(s) 149
FaeI CATG 1 cut(s) 446
FaiI YATR 6 cut(s) 127, 192, 204, 264, 329, 444
FatI CATG 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 86, 416, 502
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 3 cut(s) 86, 416, 502
FspBI CTAG 1 cut(s) 251
GluI GCNGC 3 cut(s) 86, 416, 502
GsaI CCCAGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 340
Hin1II CATG 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 494
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 241, 301
Hpy188I TCNGA 2 cut(s) 178, 369
Hpy188III TCNNGA 2 cut(s) 319, 406
Hpy8I GTNNAC 2 cut(s) 241, 301
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 2 cut(s) 237, 286
HpyCH4V TGCA 3 cut(s) 17, 32, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 342, 387
HpySE526I ACGT 2 cut(s) 237, 286
Hsp92II CATG 1 cut(s) 446
Kzo9I GATC 2 cut(s) 159, 265
LmnI GCTCC 2 cut(s) 179, 321
LpnPI CCDG 6 cut(s) 74, 87, 91, 304, 397, 490
Lsp1109I GCAGC 2 cut(s) 97, 427
MaeI CTAG 1 cut(s) 251
MaeII ACGT 2 cut(s) 237, 286
MalI GATC 2 cut(s) 161, 267
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 2 cut(s) 472, 478
MhlI GDGCHC 2 cut(s) 405, 454
MluCI AATT 2 cut(s) 42, 181
MmeI TCCRAC 2 cut(s) 96, 392
MnlI CCTC 6 cut(s) 143, 238, 300, 326, 371, 468
MseI TTAA 3 cut(s) 198, 219, 341
MslI CAYNNNNRTG 1 cut(s) 447
MspCI CTTAAG 1 cut(s) 340
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 29, 342, 387
NdeII GATC 2 cut(s) 159, 265
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 3 cut(s) 7, 151, 175
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PkrI GCNGC 3 cut(s) 87, 417, 503
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 105
PspN4I GGNNCC 3 cut(s) 7, 151, 175
PspPI GGNCC 2 cut(s) 122, 149
PspPPI RGGWCCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 3 cut(s) 198, 219, 341
SatI GCNGC 3 cut(s) 86, 416, 502
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 2 cut(s) 122, 149
SduI GDGCHC 2 cut(s) 405, 454
SetI ASST 8 cut(s) 135, 240, 289, 318, 326, 413, 479, 498
SinI GGWCC 2 cut(s) 122, 149
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 340, 404
SmoI CTYRAG 2 cut(s) 340, 404
Sse9I AATT 2 cut(s) 42, 181
SsiI CCGC 2 cut(s) 381, 501
SspMI CTAG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 2 cut(s) 240, 289
TasI AATT 2 cut(s) 42, 181
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 504
Tru1I TTAA 3 cut(s) 198, 219, 341
Tru9I TTAA 3 cut(s) 198, 219, 341
TscAI CASTG 1 cut(s) 106
TseI GCWGC 2 cut(s) 85, 415
TspDTI ATGAA 1 cut(s) 316
TspRI CASTG 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 122, 149
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.