Prupe.1G441800_v2.0.a1

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000410
Physical Location & Seq
Reverse (-)
37502996 .. 37503983
988 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G441800.1

Sequence Viewer

Length: 420 bp
ATGGCTTTGAGTTATAATGCACGAGGGTTCCTTCTGCTTCTAGCTGCTGCCTCTCTACTGGCAGCGAGCGAGGCCAGAACCCTCGTCGTTGGAGGCTCTGAAGGCTGGCGTTATGGCTTCAACTACACCGATTGGGCTTTCCAAAACAGCCCCTTCTACATAAAGGACCAATTGGTGTTCAAGTATGAGAACGACTCTGGTTACAGCGTGTACCAGCTCCCAAACCTGTGGAGCTACATAAAGTGCGATTTCAGCAAAGCCAAGCTGTTGGCAAGTGAGACGCAGGGAACTGGTGAGGGCTTCAAGGTTGAGCTGACTGAGTGGAGGCCATCTTACTTTGCCAGTAGTGGGAAGGATGGCAAGAACTGCAAGGATGGGCTCATGAAGTTGTTTGCGGTCCCACTGCCACGTTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

140

Amino Acids

15.66

Weight (kDa)

8.48

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AciI CCGC 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 3 cut(s) 121, 181, 304
AluBI AGCT 5 cut(s) 44, 217, 234, 265, 313
AluI AGCT 5 cut(s) 44, 217, 234, 265, 313
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 2 cut(s) 72, 326
ApeKI GCWGC 3 cut(s) 44, 47, 62
AspS9I GGNCC 2 cut(s) 166, 397
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 166, 397
BanII GRGCYC 1 cut(s) 381
BauI CACGAG 1 cut(s) 21
BbvI GCAGC 3 cut(s) 31, 34, 74
BccI CCATC 3 cut(s) 337, 350, 368
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 45, 48, 63
BlsI GCNGC 3 cut(s) 46, 49, 64
Bme18I GGWCC 2 cut(s) 166, 397
BmgT120I GGNCC 2 cut(s) 166, 397
BmiI GGNNCC 2 cut(s) 29, 399
BplI GAGNNNNNCTC 2 cut(s) 179, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 3 cut(s) 63, 295, 342
BseGI GGATG 2 cut(s) 361, 379
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 3 cut(s) 63, 295, 342
BseXI GCAGC 3 cut(s) 31, 34, 74
BshFI GGCC 2 cut(s) 74, 328
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 2 cut(s) 74, 328
Bsp1286I GDGCHC 1 cut(s) 381
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 74, 328
BspCNI CTCAG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 29, 399
BsrI ACTGG 3 cut(s) 63, 295, 342
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 67, 107
BstDEI CTNAG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 361, 379
BstMAI GTCTC 1 cut(s) 272
BstMWI GCNNNNNNNGC 4 cut(s) 71, 102, 252, 366
BstV1I GCAGC 3 cut(s) 31, 34, 74
BstXI CCANNNNNNTGG 2 cut(s) 228, 268
BsuRI GGCC 2 cut(s) 74, 328
BtsCI GGATG 2 cut(s) 361, 379
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 67, 107
CciI TCATGA 1 cut(s) 381
Cfr13I GGNCC 2 cut(s) 166, 397
CseI GACGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 382
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 166, 397
Eco57I CTGAAG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 1 cut(s) 385
FaiI YATR 6 cut(s) 15, 114, 161, 186, 239, 383
FaqI GGGAC 1 cut(s) 383
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 45, 48, 63
FokI GGATG 2 cut(s) 368, 386
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 3 cut(s) 45, 48, 63
FspBI CTAG 1 cut(s) 41
GluI GCNGC 3 cut(s) 45, 48, 63
HaeIII GGCC 2 cut(s) 74, 328
HgaI GACGC 1 cut(s) 289
Hin1II CATG 1 cut(s) 385
HinfI GANTC 1 cut(s) 194
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 4 cut(s) 41, 95, 163, 346
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 20, 369
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 102, 252, 366
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 1 cut(s) 385
LmnI GCTCC 2 cut(s) 222, 231
LpnPI CCDG 9 cut(s) 44, 88, 91, 183, 227, 239, 269, 276, 355
Lsp1109I GCAGC 3 cut(s) 31, 34, 74
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 200
MfeI CAATTG 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 2 cut(s) 170, 415
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 70, 392
MnlI CCTC 7 cut(s) 17, 61, 64, 86, 92, 289, 318
MseI TTAA 1 cut(s) 418
MunI CAATTG 1 cut(s) 170
MwoI GCNNNNNNNGC 4 cut(s) 71, 102, 252, 366
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 2 cut(s) 29, 399
PagI TCATGA 1 cut(s) 381
PkrI GCNGC 3 cut(s) 46, 49, 64
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PsiI TTATAA 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 29, 399
PspPI GGNCC 2 cut(s) 166, 397
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 3 cut(s) 45, 48, 63
Sau96I GGNCC 2 cut(s) 166, 397
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 381
SetI ASST 8 cut(s) 46, 219, 228, 236, 267, 309, 315, 412
SinI GGWCC 2 cut(s) 166, 397
Sse9I AATT 2 cut(s) 170, 415
SsiI CCGC 1 cut(s) 395
SspMI CTAG 1 cut(s) 41
TaiI ACGT 1 cut(s) 412
TasI AATT 2 cut(s) 170, 415
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TscAI CASTG 1 cut(s) 408
TseI GCWGC 3 cut(s) 44, 47, 62
TspDTI ATGAA 1 cut(s) 398
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 2 cut(s) 166, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.