MD01G1045100.v1.1

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000410
Physical Location & Seq
Forward (+)
14510662 .. 14511580
919 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1045100.v1.1.491

Sequence Viewer

Length: 465 bp
ATGCTGGCAGTTTGCACAGCCAATAAAGATTGGCAATATGGTAATTACACTGGCTCGGGTTTTTACAATGGCTCATACCACCTCAATAAGACCAAAGGACCCAACAAGATCGTAGTTGGTGGATCGGAAAATTGGCATTTCGGATTTAACTACACAGATTGGGCTTTGAAGAATGGTCCAATTTACATCAAGGATACTCTAGTTTTCAAGTATGAACCACCAAGTGACACCATACGTCCTCACAGTGTGTACTTGTTCCAAGACTTTCAGAGCTTCTTGAATTGTGACTTAAGCCGAGCAAGAATGGTGGGAAATCAGACACGAGGTGGCGGAGACGGCTTTGAGTTTGTGCTCCAGAGGTGGTGGCCTTACTACTTCGCTTGCGGCGAACACAATGGTTTACACTGTAAGGACGGGCTTATGAGGTTCCCCGTCTTCCCAATGTTTCGCGGCTGGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

155

Amino Acids

17.91

Weight (kDa)

8.65

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 450
AciI CCGC 3 cut(s) 330, 384, 450
AclWI GGATC 1 cut(s) 130
AdeI CACNNNGTG 3 cut(s) 224, 247, 326
AfaI GTAC 1 cut(s) 251
AflII CTTAAG 1 cut(s) 289
AgsI TTSAA 3 cut(s) 169, 208, 280
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 98, 176
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 2 cut(s) 98, 176
BaeI ACNNNNGTAYC 2 cut(s) 186, 219
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 354
BceAI ACGGC 1 cut(s) 352
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 2 cut(s) 385, 451
BlsI GCNGC 2 cut(s) 386, 452
Bme18I GGWCC 2 cut(s) 98, 176
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 98, 176
BmiI GGNNCC 2 cut(s) 100, 428
BpiI GAAGAC 1 cut(s) 427
BpmI CTGGAG 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 327
BsmBI CGTCTC 1 cut(s) 327
BsnI GGCC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 108, 122
BspACI CCGC 3 cut(s) 330, 384, 450
BspANI GGCC 1 cut(s) 367
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 100, 428
BspPI GGATC 1 cut(s) 130
BspTI CTTAAG 1 cut(s) 289
BsrI ACTGG 1 cut(s) 55
BssMI GATC 2 cut(s) 108, 122
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 245, 407
BstAFI CTTAAG 1 cut(s) 289
BstC8I GCNNGC 3 cut(s) 6, 382, 455
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 2 cut(s) 111, 125
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 2 cut(s) 108, 122
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstUI CGCG 1 cut(s) 450
BstV2I GAAGAC 1 cut(s) 427
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 367
BtsIMutI CAGTG 3 cut(s) 48, 250, 403
Cac8I GCNNGC 3 cut(s) 6, 382, 455
Cfr13I GGNCC 2 cut(s) 98, 176
Csp6I GTAC 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviQI GTAC 1 cut(s) 250
DpnI GATC 2 cut(s) 110, 124
DpnII GATC 2 cut(s) 108, 122
DraIII CACNNNGTG 3 cut(s) 224, 247, 326
EciI GGCGGA 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 98, 176
Eco88I CYCGRG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 327
FaiI YATR 5 cut(s) 39, 76, 213, 233, 422
Fnu4HI GCNGC 2 cut(s) 385, 451
Fsp4HI GCNGC 2 cut(s) 385, 451
FspBI CTAG 1 cut(s) 200
GluI GCNGC 2 cut(s) 385, 451
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 367
Hpy166II GTNNAC 2 cut(s) 250, 401
Hpy188I TCNGA 4 cut(s) 127, 143, 270, 318
Hpy188III TCNNGA 2 cut(s) 277, 355
Hpy8I GTNNAC 2 cut(s) 250, 401
HpyCH4III ACNGT 2 cut(s) 245, 407
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 235
Kzo9I GATC 2 cut(s) 108, 122
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 3 cut(s) 36, 368, 439
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 2 cut(s) 224, 284
MalI GATC 2 cut(s) 110, 124
MboI GATC 2 cut(s) 108, 122
MboII GAAGA 2 cut(s) 181, 427
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 4 cut(s) 43, 130, 180, 280
MnlI CCTC 5 cut(s) 92, 249, 317, 351, 417
MseI TTAA 2 cut(s) 147, 290
MspCI CTTAAG 1 cut(s) 289
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 336
NdeII GATC 2 cut(s) 108, 122
NlaIV GGNNCC 2 cut(s) 100, 428
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 224, 284
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PkrI GCNGC 2 cut(s) 386, 452
PpuMI RGGWCCY 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 98
PspN4I GGNNCC 2 cut(s) 100, 428
PspPI GGNCC 2 cut(s) 98, 176
PspPPI RGGWCCY 1 cut(s) 98
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 147, 290
SatI GCNGC 2 cut(s) 385, 451
Sau3AI GATC 2 cut(s) 108, 122
Sau96I GGNCC 2 cut(s) 98, 176
SduI GDGCHC 1 cut(s) 354
SetI ASST 6 cut(s) 84, 238, 275, 328, 362, 428
SinI GGWCC 2 cut(s) 98, 176
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 4 cut(s) 43, 130, 180, 280
SsiI CCGC 3 cut(s) 330, 384, 450
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 245, 407
TaiI ACGT 1 cut(s) 238
TasI AATT 4 cut(s) 43, 130, 180, 280
TatI WGTACW 1 cut(s) 249
TauI GCSGC 2 cut(s) 387, 453
Tru1I TTAA 2 cut(s) 147, 290
Tru9I TTAA 2 cut(s) 147, 290
TscAI CASTG 3 cut(s) 55, 250, 410
TseFI GTSAC 2 cut(s) 224, 284
Tsp45I GTSAC 2 cut(s) 224, 284
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 3 cut(s) 55, 250, 410
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 98, 176
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.