RLG00000029220

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000410
Physical Location & Seq
Reverse (-)
34712202 .. 34713004
803 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029220

Sequence Viewer

Length: 429 bp
ATGGCTTTGATTAGGAGTGCACAATTAGGGTTCATTCTCCTTGTAGCTACTGCTTCTCTGTTAGCAGTGAGTGAGGCCAAAACTATTGTCGTCGGAGGTTCTGAAGGCTGGCGTTTTGGTCTCAACTACACTGACTGGGCTCTCCAAAACAGTCCTTTTTACATAAATGATGAACTGAATGATCCTCCAAGCAAGACCAACTCAGGTTACAGCGTGTACTTGCTGCCAAACCTGTGGAGCTACATAAGTTGTGACTTCAGCAAAGCCAAGATATTGGCTAGTGAGGCCCGAGGAGATGGTGGGGGCTTTAAGGTTGAATTGAATCAACAAAGGCCTTATTACTATGCTAGTGGTAACAAAGATGGCTGCAATTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACGTTGGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

143

Amino Acids

15.72

Weight (kDa)

8.4

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 176
AcuI CTGAAG 2 cut(s) 123, 241
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 2 cut(s) 317, 322
AluBI AGCT 3 cut(s) 47, 240, 394
AluI AGCT 3 cut(s) 47, 240, 394
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 125
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 3 cut(s) 75, 285, 332
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 223, 366
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspS9I GGNCC 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 288
BaeGI GKGCMC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 210, 353
BccI CCATC 3 cut(s) 290, 356, 374
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 279, 348
BisI GCNGC 2 cut(s) 224, 367
BlsI GCNGC 2 cut(s) 225, 368
BmeT110I CYCGRG 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 145
BmuI ACTGGG 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 306
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 2 cut(s) 210, 353
BshFI GGCC 3 cut(s) 77, 287, 334
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 125
BsnI GGCC 3 cut(s) 77, 287, 334
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 22, 142
Bsp143I GATC 1 cut(s) 181
BspANI GGCC 3 cut(s) 77, 287, 334
BspCNI CTCAG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 387
BspPI GGATC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 284, 372
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 210, 353
BstXI CCANNNNNNTGG 2 cut(s) 234, 274
BsuRI GGCC 3 cut(s) 77, 287, 334
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 129
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 388
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 125
Eco57I CTGAAG 2 cut(s) 123, 241
Eco88I CYCGRG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 391
FaiI YATR 4 cut(s) 164, 245, 345, 389
FatI CATG 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 224, 367
FokI GGATG 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 224, 367
FspBI CTAG 2 cut(s) 279, 348
GluI GCNGC 2 cut(s) 224, 367
HaeIII GGCC 3 cut(s) 77, 287, 334
Hin1II CATG 1 cut(s) 391
HinfI GANTC 2 cut(s) 322, 384
Hpy166II GTNNAC 2 cut(s) 20, 217
Hpy188I TCNGA 2 cut(s) 95, 103
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 2 cut(s) 20, 217
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 20, 369, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 372
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 1 cut(s) 391
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 1 cut(s) 237
LpnPI CCDG 4 cut(s) 94, 121, 189, 245
Lsp1109I GCAGC 2 cut(s) 210, 353
MaeI CTAG 2 cut(s) 279, 348
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 3 cut(s) 206, 251, 353
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MfeI CAATTG 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 22, 142
MluCI AATT 3 cut(s) 23, 317, 370
MlyI GAGTC 1 cut(s) 378
MmeI TCCRAC 2 cut(s) 73, 398
MnlI CCTC 5 cut(s) 67, 89, 195, 277, 284
MseI TTAA 1 cut(s) 309
MunI CAATTG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 284, 372
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 251
PagI TCATGA 1 cut(s) 387
PceI AGGCCT 1 cut(s) 334
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 225, 368
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 286
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 224, 367
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 378
SduI GDGCHC 2 cut(s) 22, 142
SetI ASST 8 cut(s) 49, 100, 208, 234, 242, 315, 396, 418
Sse9I AATT 3 cut(s) 23, 317, 370
SseBI AGGCCT 1 cut(s) 334
SspMI CTAG 2 cut(s) 279, 348
StuI AGGCCT 1 cut(s) 334
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 418
TasI AATT 3 cut(s) 23, 317, 370
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 72, 136
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 2 cut(s) 223, 366
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 22, 186, 404
TspRI CASTG 2 cut(s) 72, 136
VneI GTGCAC 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
XspI CTAG 2 cut(s) 279, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.