Rw1G013450

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000410
Physical Location & Seq
Reverse (-)
29998554 .. 30017168
18615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013450.1

Sequence Viewer

Length: 435 bp
ATGGCCTTGATTAGGAGTGCACAATTAGGGTTCATTCTCCTTGTAGCTACTGCTTCTCTATTAGAAGTGAGCGAGGCCAAAACTATTGTCGTCGGCGGTTCTGAAGGCTGGCGTTTTGGTTTCAACTACACTGATTGGGCTCTCCAAAACAGTCCATTTTACATAAATGATGAACTGGTGTTCAAGTATGGTCCGCCAAGCAAGACCAACTCTGGTTACAGCGTTTACTTGCTGCCAAACCTGTGGAGCTACATTACCTGTGATTTCAGCAAAGCCAAGATATTGGCGAGTCAGACTCAAGGAGGTGGTAAGGGCTTTAAGGTTGTGCTGAATCAATGGAGGCCTTACTACTTTGCTAGTGGTAACAAGGATGGCTACAATTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACATTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

144

Amino Acids

16.08

Weight (kDa)

9.06

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 96, 194
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 2 cut(s) 124, 184
AluBI AGCT 3 cut(s) 47, 249, 403
AluI AGCT 3 cut(s) 47, 249, 403
Alw21I GWGCWC 1 cut(s) 22
Alw44I GTGCAC 1 cut(s) 18
AoxI GGCC 3 cut(s) 3, 75, 341
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 232
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspS9I GGNCC 1 cut(s) 191
AvaII GGWCC 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 365, 383
BfaI CTAG 1 cut(s) 357
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpuEI CTTGAG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 376, 394
BseLI CCNNNNNNNGG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 3 cut(s) 5, 77, 343
BsiHKAI GWGCWC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 3 cut(s) 5, 77, 343
Bsp1286I GDGCHC 2 cut(s) 22, 142
BspACI CCGC 2 cut(s) 96, 194
BspANI GGCC 3 cut(s) 5, 77, 343
BspHI TCATGA 1 cut(s) 396
BsrI ACTGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 10
BstF5I GGATG 2 cut(s) 376, 394
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 219
BstXI CCANNNNNNTGG 2 cut(s) 243, 283
BsuRI GGCC 3 cut(s) 5, 77, 343
BtsCI GGATG 2 cut(s) 376, 394
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 191
CviAII CATG 1 cut(s) 397
EciI GGCGGA 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 123
EcoNI CCTNNNNNAGG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 400
FaiI YATR 3 cut(s) 164, 189, 398
FatI CATG 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 2 cut(s) 383, 401
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 1 cut(s) 357
GluI GCNGC 1 cut(s) 233
HaeIII GGCC 3 cut(s) 5, 77, 343
Hin1II CATG 1 cut(s) 400
HinfI GANTC 4 cut(s) 289, 295, 331, 393
Hpy166II GTNNAC 2 cut(s) 20, 226
Hpy188I TCNGA 2 cut(s) 103, 294
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 2 cut(s) 20, 226
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 20, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
Hsp92II CATG 1 cut(s) 400
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 5 cut(s) 94, 161, 198, 254, 271
Lsp1109I GCAGC 1 cut(s) 219
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 215, 362
MfeI CAATTG 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 22, 142
MluCI AATT 3 cut(s) 23, 379, 430
MlyI GAGTC 3 cut(s) 289, 298, 387
MnlI CCTC 3 cut(s) 67, 296, 333
MseI TTAA 2 cut(s) 318, 433
MunI CAATTG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 381
NlaIII CATG 1 cut(s) 400
PagI TCATGA 1 cut(s) 396
PceI AGGCCT 1 cut(s) 343
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 234
PleI GAGTC 3 cut(s) 289, 297, 387
PpsI GAGTC 3 cut(s) 289, 297, 387
PspPI GGNCC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 318, 433
SatI GCNGC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 3 cut(s) 289, 298, 387
SduI GDGCHC 2 cut(s) 22, 142
SetI ASST 7 cut(s) 49, 243, 251, 260, 307, 324, 405
SinI GGWCC 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 3 cut(s) 23, 379, 430
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 2 cut(s) 96, 194
SspMI CTAG 1 cut(s) 357
StuI AGGCCT 1 cut(s) 343
TaaI ACNGT 1 cut(s) 152
TasI AATT 3 cut(s) 23, 379, 430
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 2 cut(s) 318, 433
Tru9I TTAA 2 cut(s) 318, 433
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 22, 186, 413
TspRI CASTG 1 cut(s) 136
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.