RchiOBHm_Chr6g0258941

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000410
Physical Location & Seq
Reverse (-)
14300320 .. 14301070
751 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23219

Sequence Viewer

Length: 516 bp
ATGGGTTCCAGTTTTGCACAAGCACTTTCTGCAATGCTGCTAATTGCTTCAATGGTGGCATTTTGCACTGCCAACAAGGATTGGAAGCACGGGAACTACACCGGTTGGGGTTCTAACCATGGTCCATATCACCTTAACACGACAAACGGACCCAACAATAAGATCGTTGTGGGTGGTTCGGACTGGCATTATGGTTTTAACTACGCAGATTGGTCTTTGAAAAATAACTCATTTTACGTCCAGGACACTCTAGTTTTCAAGTATGATCCACCAAACGACACCACACGTCCTCATAGCGTGTACTTGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTTAGCCAGGCCAGGATTGTGGGAAGTCCAACACAAGGAGGCGGAGACGGGTTTCAGTTCGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGTGAGCACGATGGTGCTCATTGTAAGGACGGAATGATGAGGTTCTTTGTCTTCCCCAAGCTCCGCGGCTGGCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

171

Amino Acids

19.36

Weight (kDa)

7.73

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 501
AciI CCGC 3 cut(s) 381, 499, 501
AclWI GGATC 1 cut(s) 260
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 284
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 3 cut(s) 51, 220, 259
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 3 cut(s) 240, 345, 350
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 3 cut(s) 324, 411, 496
AluI AGCT 3 cut(s) 324, 411, 496
Alw21I GWGCWC 3 cut(s) 405, 444, 454
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 37, 415
AsiGI ACCGGT 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 122, 149
AsuHPI GGTGA 2 cut(s) 122, 449
AvaII GGWCC 2 cut(s) 122, 149
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 3 cut(s) 405, 444, 454
BbvI GCAGC 2 cut(s) 24, 427
BccI CCATC 1 cut(s) 440
BciT130I CCWGG 3 cut(s) 242, 347, 352
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 1 cut(s) 251
BisI GCNGC 3 cut(s) 38, 416, 502
BlsI GCNGC 3 cut(s) 39, 417, 503
Bme1390I CCNGG 3 cut(s) 242, 347, 352
Bme18I GGWCC 2 cut(s) 122, 149
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 122, 149
BmiI GGNNCC 2 cut(s) 7, 151
BmrFI CCNGG 3 cut(s) 242, 347, 352
BpiI GAAGAC 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 118, 499
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 9, 188
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 3 cut(s) 242, 347, 352
BseDI CCNNGG 2 cut(s) 118, 499
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 9, 188
BseXI GCAGC 2 cut(s) 24, 427
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 1 cut(s) 350
BshTI ACCGGT 1 cut(s) 101
BsiHKAI GWGCWC 3 cut(s) 405, 444, 454
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 3 cut(s) 405, 444, 454
Bsp143I GATC 2 cut(s) 162, 265
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 3 cut(s) 381, 499, 501
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 7, 151
BspPI GGATC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 9, 188
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 118, 499
BssMI GATC 2 cut(s) 162, 265
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 242, 347, 352
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 413, 506
BstDSI CCRYGG 2 cut(s) 118, 499
BstFNI CGCG 1 cut(s) 501
BstKTI GATC 2 cut(s) 165, 268
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 162, 265
BstMWI GCNNNNNNNGC 2 cut(s) 29, 342
BstNI CCWGG 3 cut(s) 242, 347, 352
BstSCI CCNGG 3 cut(s) 240, 345, 350
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 24, 427
BstV2I GAAGAC 1 cut(s) 478
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 2 cut(s) 118, 499
BtrI CACGTC 1 cut(s) 287
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 413, 506
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 122, 149
Cfr42I CCGCGG 1 cut(s) 502
Csp6I GTAC 1 cut(s) 301
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 119
CviJI RGCY 7 cut(s) 324, 345, 350, 411, 418, 496, 504
CviKI_1 RGCY 7 cut(s) 324, 345, 350, 411, 418, 496, 504
CviQI GTAC 1 cut(s) 301
DpnI GATC 2 cut(s) 164, 267
DpnII GATC 2 cut(s) 162, 265
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 122, 149
EcoRII CCWGG 3 cut(s) 240, 345, 350
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 1 cut(s) 122
FaiI YATR 6 cut(s) 120, 127, 192, 264, 294, 329
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 38, 416, 502
Fsp4HI GCNGC 3 cut(s) 38, 416, 502
FspBI CTAG 1 cut(s) 251
GluI GCNGC 3 cut(s) 38, 416, 502
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 102
Hin1II CATG 1 cut(s) 122
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 122, 449
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 237, 286
HpyCH4V TGCA 3 cut(s) 17, 32, 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 342
HpySE526I ACGT 2 cut(s) 237, 286
Hsp92II CATG 1 cut(s) 122
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 2 cut(s) 162, 265
LmnI GCTCC 2 cut(s) 321, 501
Lsp1109I GCAGC 2 cut(s) 24, 427
MaeI CTAG 1 cut(s) 251
MaeII ACGT 2 cut(s) 237, 286
MalI GATC 2 cut(s) 164, 267
MboI GATC 2 cut(s) 162, 265
MboII GAAGA 1 cut(s) 478
MhlI GDGCHC 3 cut(s) 405, 444, 454
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 3 cut(s) 300, 371, 468
MseI TTAA 2 cut(s) 135, 198
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 501
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 3 cut(s) 242, 347, 352
MvaI CCWGG 3 cut(s) 242, 347, 352
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 29, 342
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 162, 265
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 7, 151
OliI CACNNNNGTG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 240
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 3 cut(s) 39, 417, 503
Psp6I CCWGG 3 cut(s) 240, 345, 350
PspGI CCWGG 3 cut(s) 240, 345, 350
PspN4I GGNNCC 2 cut(s) 7, 151
PspPI GGNCC 2 cut(s) 122, 149
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 447
SacII CCGCGG 1 cut(s) 502
SaqAI TTAA 2 cut(s) 135, 198
SatI GCNGC 3 cut(s) 38, 416, 502
Sau3AI GATC 2 cut(s) 162, 265
Sau96I GGNCC 2 cut(s) 122, 149
ScrFI CCNGG 3 cut(s) 242, 347, 352
SduI GDGCHC 3 cut(s) 405, 444, 454
SetI ASST 8 cut(s) 135, 240, 289, 318, 326, 413, 479, 498
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 2 cut(s) 122, 149
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 1 cut(s) 42
SsiI CCGC 3 cut(s) 381, 499, 501
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 240, 345, 350
StyI CCWWGG 1 cut(s) 118
TaiI ACGT 2 cut(s) 240, 289
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 504
Tru1I TTAA 2 cut(s) 135, 198
Tru9I TTAA 2 cut(s) 135, 198
TscAI CASTG 1 cut(s) 73
TseI GCWGC 2 cut(s) 37, 415
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 2 cut(s) 162, 480
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 122, 149
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.