pycom15g08270

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000410
Physical Location & Seq
Reverse (-)
5165751 .. 5166444
694 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08270.2

Sequence Viewer

Length: 435 bp
ATGGCTTTGAGTTCTAATGCGCAAGGGTTCATCCTCCTCCTAGCTGCTGCCTCTCTCTTGGCAGTGACTGAGGCCAGAACCGTGGTTGTTGGTGGGTCTGAAGGCTGGCGTTTCGGCTACAACTACACTGACTGGGCGCTCCAAAACAGCCCCTTTTACATAAATGACCAACTAGTTTTCAAGTACGATCCACCGAGTGAGGCGAACTCCGGCTACAGCGTATACCAACTGCCGAACCTATGGAGCTACATAACTTGCGACTTTAGCAACGCCAAGCTGCTGGCGAGTCAGATGCAGGGAGGTGGCGACGGCTTCAAGGTGGAGCTGACTCAGTGGAGTCCTTATTACTTTGCCAGTGGTGAAAAAGATGGCAAGAACTGCAAGGATGGGCTGATGAAGCTGTTTGCCATCCCACTGCCACGTTGGAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

145

Amino Acids

15.99

Weight (kDa)

4.95

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccI GTMKAC 1 cut(s) 222
AclWI GGATC 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 120
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 2 cut(s) 181, 316
AhlI ACTAGT 1 cut(s) 172
AluBI AGCT 5 cut(s) 44, 246, 277, 325, 400
AluI AGCT 5 cut(s) 44, 246, 277, 325, 400
AlwI GGATC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 3 cut(s) 44, 47, 277
AspLEI GCGC 2 cut(s) 22, 139
AsuHPI GGTGA 1 cut(s) 371
BbvI GCAGC 3 cut(s) 31, 34, 264
BccI CCATC 3 cut(s) 362, 380, 416
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 2 cut(s) 41, 173
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 3 cut(s) 45, 48, 278
BlsI GCNGC 3 cut(s) 46, 49, 279
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 2 cut(s) 137, 354
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 30, 391, 408
BseMII CTCAG 2 cut(s) 60, 344
BseNI ACTGG 2 cut(s) 137, 354
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 31, 34, 264
BshFI GGCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 187
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 61, 343
BspPI GGATC 1 cut(s) 182
BsrI ACTGG 2 cut(s) 137, 354
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 187
BssNAI GTATAC 1 cut(s) 223
Bst1107I GTATAC 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 107, 282
BstDEI CTNAG 2 cut(s) 69, 330
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 3 cut(s) 30, 391, 408
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 22, 139
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 3 cut(s) 264, 378, 397
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 3 cut(s) 31, 34, 264
BstXI CCANNNNNNTGG 2 cut(s) 82, 280
BstZ17I GTATAC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 81
BtsCI GGATG 3 cut(s) 30, 391, 408
BtsI GCAGTG 2 cut(s) 69, 413
BtsIMutI CAGTG 5 cut(s) 69, 126, 338, 361, 413
Cac8I GCNNGC 2 cut(s) 107, 282
CaiI CAGNNNCTG 1 cut(s) 68
CfoI GCGC 2 cut(s) 22, 139
Csp6I GTAC 1 cut(s) 184
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 69, 330
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 120
FaiI YATR 4 cut(s) 161, 223, 241, 251
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 45, 48, 278
FokI GGATG 3 cut(s) 17, 395, 398
Fsp4HI GCNGC 3 cut(s) 45, 48, 278
FspBI CTAG 2 cut(s) 41, 173
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 2 cut(s) 21, 138
GluI GCNGC 3 cut(s) 45, 48, 278
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 210
HhaI GCGC 2 cut(s) 22, 139
Hin6I GCGC 2 cut(s) 20, 137
HinP1I GCGC 2 cut(s) 20, 137
HinfI GANTC 3 cut(s) 286, 328, 337
HpaII CCGG 1 cut(s) 210
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 2 cut(s) 100, 291
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 295, 381
HpyF10VI GCNNNNNNNGC 3 cut(s) 264, 378, 397
HpyF3I CTNAG 2 cut(s) 69, 330
HpySE526I ACGT 1 cut(s) 421
HspAI GCGC 2 cut(s) 20, 137
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 3 cut(s) 144, 243, 322
LpnPI CCDG 7 cut(s) 88, 91, 118, 223, 266, 281, 367
Lsp1109I GCAGC 3 cut(s) 31, 34, 264
LweI GCATC 1 cut(s) 282
MaeI CTAG 2 cut(s) 41, 173
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MluCI AATT 1 cut(s) 430
MlyI GAGTC 3 cut(s) 295, 322, 346
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 6 cut(s) 44, 47, 61, 64, 193, 293
MseI TTAA 1 cut(s) 433
MspI CCGG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 264, 378, 397
NdeII GATC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 21
PkrI GCNGC 3 cut(s) 46, 49, 279
PleI GAGTC 3 cut(s) 294, 322, 345
PpsI GAGTC 3 cut(s) 294, 322, 345
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 433
SatI GCNGC 3 cut(s) 45, 48, 278
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 3 cut(s) 295, 322, 346
SetI ASST 9 cut(s) 46, 240, 248, 279, 304, 321, 327, 402, 424
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 214
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 1 cut(s) 430
SspMI CTAG 2 cut(s) 41, 173
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 1 cut(s) 424
TasI AATT 1 cut(s) 430
Tru1I TTAA 1 cut(s) 433
Tru9I TTAA 1 cut(s) 433
TscAI CASTG 5 cut(s) 69, 133, 338, 361, 420
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 44, 47, 277
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 19, 410
TspRI CASTG 5 cut(s) 69, 133, 338, 361, 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 2 cut(s) 41, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.