FvH4_2g06780

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000410
Physical Location & Seq
Reverse (-)
5611063 .. 5616516
5454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06780.t1

Sequence Viewer

Length: 510 bp
ATGGGTTCCAAGTTTGCACAAGCACTTTTTGCAATGCTGCTAATTGCTTCAATGGTGGCATCTAGCGCAGCCAACAAGGATTGGCAGCAGCGGAACTACACTGGCTGGGGTTTCAACCATGGTCCATATCACCTCAACAAGACAGAAGGACCCAAAAAGATCGTCGTTGGTGGCTCGGAAAACTGGCATTACGGTTTTAACTATGCAGATTGGTCTCTGAAAAATGCCTCATTTTACGTCAAGGACACTCTAGTTTTCAAGTACGATCCTCCAAACAACACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATACATTGTGACTTAAGCCAGGCCAGGATGGTGGGTAGTCCAACTCAAGGCGGCGGAGACGGCGTTGAGTTTGTGCTCAAGAGCTGGCAGCCGTACTACTTTGCTTGTGGCGAGCACAATGGCACTCACTGTAAAGACGGAATGATGAGGTTCTTCGTCTTCCCAAAGCTTCGCGGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

8.93

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 501
AciI CCGC 4 cut(s) 91, 378, 381, 501
AclWI GGATC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 3 cut(s) 263, 302, 422
AfiI CCNNNNNNNGG 1 cut(s) 374
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 51, 115, 259
AjnI CCWGG 2 cut(s) 345, 350
AluBI AGCT 3 cut(s) 324, 411, 496
AluI AGCT 3 cut(s) 324, 411, 496
Alw21I GWGCWC 2 cut(s) 405, 444
Alw26I GTCTC 2 cut(s) 219, 378
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 5 cut(s) 37, 68, 85, 88, 415
ArsI GACNNNNNNTTYG 2 cut(s) 147, 179
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 122, 149
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 122, 149
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 405, 444
BbvI GCAGC 5 cut(s) 24, 80, 97, 100, 427
BccI CCATC 1 cut(s) 349
BceAI ACGGC 2 cut(s) 403, 403
BciT130I CCWGG 2 cut(s) 347, 352
BcoDI GTCTC 2 cut(s) 219, 378
BfaI CTAG 2 cut(s) 63, 251
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 7 cut(s) 38, 69, 86, 89, 379, 416, 502
BlsI GCNGC 7 cut(s) 39, 70, 87, 90, 380, 417, 503
Bme1390I CCNGG 2 cut(s) 347, 352
Bme18I GGWCC 2 cut(s) 122, 149
BmgT120I GGNCC 2 cut(s) 122, 149
BmiI GGNNCC 2 cut(s) 7, 151
BmrFI CCNGG 2 cut(s) 347, 352
BmsI GCATC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 478
BpuEI CTTGAG 2 cut(s) 357, 389
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 118
BsaXI ACNNNNNCTCC 4 cut(s) 271, 301, 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 2 cut(s) 106, 188
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 2 cut(s) 347, 352
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 106, 188
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 5 cut(s) 24, 80, 97, 100, 427
BseYI CCCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 2 cut(s) 405, 444
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 2 cut(s) 219, 378
BsmBI CGTCTC 1 cut(s) 378
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 405, 444
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 2 cut(s) 159, 265
Bsp19I CCATGG 1 cut(s) 118
BspACI CCGC 4 cut(s) 91, 378, 381, 501
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 7, 151
BspPI GGATC 1 cut(s) 260
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 2 cut(s) 106, 188
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 2 cut(s) 159, 265
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 2 cut(s) 347, 352
Bst4CI ACNGT 2 cut(s) 194, 458
BstAFI CTTAAG 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 413, 440
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 162, 268
BstMAI GTCTC 2 cut(s) 219, 378
BstMBI GATC 2 cut(s) 159, 265
BstMWI GCNNNNNNNGC 3 cut(s) 29, 65, 387
BstNI CCWGG 2 cut(s) 347, 352
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 345, 350
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 5 cut(s) 24, 80, 97, 100, 427
BstV2I GAAGAC 1 cut(s) 478
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 99, 454
Cac8I GCNNGC 2 cut(s) 413, 440
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 122, 149
Csp6I GTAC 3 cut(s) 262, 301, 421
CviAII CATG 2 cut(s) 119, 304
CviQI GTAC 3 cut(s) 262, 301, 421
DpnI GATC 2 cut(s) 161, 267
DpnII GATC 2 cut(s) 159, 265
DraIII CACNNNGTG 1 cut(s) 298
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 122, 149
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 345, 350
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 2 cut(s) 122, 307
FaiI YATR 5 cut(s) 120, 127, 204, 305, 329
FatI CATG 2 cut(s) 118, 303
Fnu4HI GCNGC 7 cut(s) 38, 69, 86, 89, 379, 416, 502
FokI GGATG 1 cut(s) 367
Fsp4HI GCNGC 7 cut(s) 38, 69, 86, 89, 379, 416, 502
FspBI CTAG 2 cut(s) 63, 251
GlaI GCGC 1 cut(s) 67
GluI GCNGC 7 cut(s) 38, 69, 86, 89, 379, 416, 502
GsaI CCCAGC 1 cut(s) 109
HaeIII GGCC 1 cut(s) 350
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 122, 307
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 494
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 178, 219
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 194, 458
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 17, 32, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 65, 387
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 2 cut(s) 122, 307
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 159, 265
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 8 cut(s) 87, 91, 169, 332, 337, 359, 364, 397
Lsp1109I GCAGC 5 cut(s) 24, 80, 97, 100, 427
LweI GCATC 1 cut(s) 68
MaeI CTAG 2 cut(s) 63, 251
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 161, 267
MboI GATC 2 cut(s) 159, 265
MboII GAAGA 2 cut(s) 472, 478
MhlI GDGCHC 2 cut(s) 405, 444
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 6 cut(s) 143, 238, 279, 297, 300, 468
MseI TTAA 2 cut(s) 198, 341
MspA1I CMGCKG 1 cut(s) 91
MspCI CTTAAG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 347, 352
MvaI CCWGG 2 cut(s) 347, 352
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 29, 65, 387
NcoI CCATGG 1 cut(s) 118
NdeII GATC 2 cut(s) 159, 265
NlaIII CATG 2 cut(s) 122, 307
NlaIV GGNNCC 2 cut(s) 7, 151
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 307
PkrI GCNGC 7 cut(s) 39, 70, 87, 90, 380, 417, 503
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 345, 350
PspFI CCCAGC 1 cut(s) 105
PspGI CCWGG 2 cut(s) 345, 350
PspN4I GGNNCC 2 cut(s) 7, 151
PspPI GGNCC 2 cut(s) 122, 149
PspPPI RGGWCCY 1 cut(s) 149
RsaI GTAC 3 cut(s) 263, 302, 422
RsaNI GTAC 3 cut(s) 262, 301, 421
SaqAI TTAA 2 cut(s) 198, 341
SatI GCNGC 7 cut(s) 38, 69, 86, 89, 379, 416, 502
Sau3AI GATC 2 cut(s) 159, 265
Sau96I GGNCC 2 cut(s) 122, 149
ScrFI CCNGG 2 cut(s) 347, 352
SduI GDGCHC 2 cut(s) 405, 444
SetI ASST 8 cut(s) 135, 240, 289, 318, 326, 413, 479, 498
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 2 cut(s) 122, 149
SmlI CTYRAG 3 cut(s) 340, 372, 404
SmoI CTYRAG 3 cut(s) 340, 372, 404
Sse9I AATT 1 cut(s) 42
SsiI CCGC 4 cut(s) 91, 378, 381, 501
SspMI CTAG 2 cut(s) 63, 251
StyD4I CCNGG 2 cut(s) 345, 350
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 2 cut(s) 194, 458
TaiI ACGT 1 cut(s) 240
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 300
TauI GCSGC 2 cut(s) 381, 504
Tru1I TTAA 2 cut(s) 198, 341
Tru9I TTAA 2 cut(s) 198, 341
TscAI CASTG 2 cut(s) 106, 461
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 5 cut(s) 37, 68, 85, 88, 415
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 2 cut(s) 106, 461
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 122, 149
XceI RCATGY 1 cut(s) 307
XspI CTAG 2 cut(s) 63, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.