FvH4_2g06770

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000410
Physical Location & Seq
Reverse (-)
5607637 .. 5609195
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06770.t2

Sequence Viewer

Length: 513 bp
ATGGGTTCTAGTTTTGCACAAGCACTTTCTGCAATGCTGCTGATTGCTTCAATGGTAGCAGTTTGCACTGCCAACAAGGATTGGAAGCACGGGAACTACAGTACTGGTTGGGGCTCTAACCATGGTCCATATCACCTCAACTCGACAAACGAACCCAACAAGATCGTTGTTGGCGGTTCGGACTGGCATTACGGTTTTAACTACGCAGATTGGTCTTTGAAAAGTAGCTCAATTTACGTCCAGGACACTCTAGTTTTCAAGTATGATCCACCAAACGACACCACACGTCCTCATAGTGTGTACTTGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTTAGCCAGGCCAGGATGGTGGGTAGTCCAACTCAAGGCGGCGGAGACGGCTTTGAGTTTGTGCTTAAGAGCTGGCAGCCTTACTTCTTCGCTTGTGGCGAACACGATGGTGCCCATTGCAAGGACGGAATGATGAGGTTCTTTGTCTTCCCCAAAATCCGCGGTTGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

171

Amino Acids

19.09

Weight (kDa)

6.69

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccII CGCG 1 cut(s) 501
AciI CCGC 5 cut(s) 174, 378, 381, 499, 501
AclWI GGATC 1 cut(s) 260
AfaI GTAC 2 cut(s) 103, 302
AfiI CCNNNNNNNGG 2 cut(s) 374, 460
AflII CTTAAG 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 51, 220, 259
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 3 cut(s) 240, 345, 350
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 3 cut(s) 228, 324, 411
AluI AGCT 3 cut(s) 228, 324, 411
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 37, 415
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 478
BbvI GCAGC 2 cut(s) 24, 427
BccI CCATC 2 cut(s) 349, 440
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 3 cut(s) 242, 347, 352
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 2 cut(s) 9, 251
BfmI CTRYAG 1 cut(s) 97
BfrI CTTAAG 1 cut(s) 404
BisI GCNGC 3 cut(s) 38, 379, 416
BlsI GCNGC 3 cut(s) 39, 380, 417
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 3 cut(s) 242, 347, 352
Bme18I GGWCC 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 3 cut(s) 242, 347, 352
BpiI GAAGAC 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 121, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 460
Bse1I ACTGG 2 cut(s) 109, 188
Bse3DI GCAATG 2 cut(s) 39, 454
BseBI CCWGG 3 cut(s) 242, 347, 352
BseDI CCNNGG 2 cut(s) 121, 499
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 374, 460
BseMI GCAATG 2 cut(s) 39, 454
BseNI ACTGG 2 cut(s) 109, 188
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 2 cut(s) 24, 427
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 374, 460
BsmAI GTCTC 1 cut(s) 378
BsmBI CGTCTC 1 cut(s) 378
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 116, 454
Bsp143I GATC 2 cut(s) 162, 265
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 5 cut(s) 174, 378, 381, 499, 501
BspANI GGCC 1 cut(s) 350
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 39, 454
BsrI ACTGG 2 cut(s) 109, 188
BssECI CCNNGG 2 cut(s) 121, 499
BssMI GATC 2 cut(s) 162, 265
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 3 cut(s) 242, 347, 352
Bst4CI ACNGT 2 cut(s) 101, 194
BstAFI CTTAAG 1 cut(s) 404
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 413
BstDSI CCRYGG 2 cut(s) 121, 499
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 501
BstKTI GATC 2 cut(s) 165, 268
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 162, 265
BstMWI GCNNNNNNNGC 3 cut(s) 29, 342, 387
BstNI CCWGG 3 cut(s) 242, 347, 352
BstSCI CCNGG 3 cut(s) 240, 345, 350
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 24, 427
BstV2I GAAGAC 1 cut(s) 478
BstXI CCANNNNNNTGG 2 cut(s) 318, 358
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 2 cut(s) 121, 499
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 360
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 508
Cac8I GCNNGC 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 125
Cfr42I CCGCGG 1 cut(s) 502
Csp6I GTAC 2 cut(s) 102, 301
CviAII CATG 1 cut(s) 122
CviJI RGCY 8 cut(s) 114, 228, 324, 345, 350, 390, 411, 418
CviKI_1 RGCY 8 cut(s) 114, 228, 324, 345, 350, 390, 411, 418
CviQI GTAC 2 cut(s) 102, 301
DpnI GATC 2 cut(s) 164, 267
DpnII GATC 2 cut(s) 162, 265
EciI GGCGGA 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 240, 345, 350
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 1 cut(s) 125
FaiI YATR 5 cut(s) 123, 130, 264, 294, 329
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 38, 379, 416
FokI GGATG 1 cut(s) 367
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 38, 379, 416
FspBI CTAG 2 cut(s) 9, 251
GluI GCNGC 3 cut(s) 38, 379, 416
HaeIII GGCC 1 cut(s) 350
Hin1II CATG 1 cut(s) 125
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 101, 194
HpyCH4IV ACGT 2 cut(s) 237, 286
HpyCH4V TGCA 4 cut(s) 17, 32, 66, 459
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 342, 387
HpySE526I ACGT 2 cut(s) 237, 286
Hsp92II CATG 1 cut(s) 125
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 2 cut(s) 162, 265
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 9 cut(s) 90, 169, 227, 254, 332, 337, 359, 364, 397
Lsp1109I GCAGC 2 cut(s) 24, 427
MaeI CTAG 2 cut(s) 9, 251
MaeII ACGT 2 cut(s) 237, 286
MalI GATC 2 cut(s) 164, 267
MboI GATC 2 cut(s) 162, 265
MboII GAAGA 2 cut(s) 418, 478
MhlI GDGCHC 2 cut(s) 116, 454
MluCI AATT 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 3 cut(s) 146, 300, 468
MseI TTAA 2 cut(s) 198, 405
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 501
MspCI CTTAAG 1 cut(s) 404
MspR9I CCNGG 3 cut(s) 242, 347, 352
MvaI CCWGG 3 cut(s) 242, 347, 352
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 29, 342, 387
NcoI CCATGG 1 cut(s) 121
NdeII GATC 2 cut(s) 162, 265
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 3 cut(s) 39, 380, 417
Psp6I CCWGG 3 cut(s) 240, 345, 350
PspGI CCWGG 3 cut(s) 240, 345, 350
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 2 cut(s) 103, 302
RsaNI GTAC 2 cut(s) 102, 301
RseI CAYNNNNRTG 1 cut(s) 447
SacII CCGCGG 1 cut(s) 502
SaqAI TTAA 2 cut(s) 198, 405
SatI GCNGC 3 cut(s) 38, 379, 416
Sau3AI GATC 2 cut(s) 162, 265
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 1 cut(s) 103
ScrFI CCNGG 3 cut(s) 242, 347, 352
SduI GDGCHC 2 cut(s) 116, 454
SetI ASST 8 cut(s) 138, 230, 240, 289, 318, 326, 413, 479
SfcI CTRYAG 1 cut(s) 97
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 372, 404
SmoI CTYRAG 2 cut(s) 372, 404
Sse9I AATT 1 cut(s) 231
SsiI CCGC 5 cut(s) 174, 378, 381, 499, 501
SspMI CTAG 2 cut(s) 9, 251
StyD4I CCNGG 3 cut(s) 240, 345, 350
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 101, 194
TaiI ACGT 2 cut(s) 240, 289
TaqI TCGA 1 cut(s) 143
TasI AATT 1 cut(s) 231
TatI WGTACW 2 cut(s) 101, 300
TauI GCSGC 1 cut(s) 381
Tru1I TTAA 2 cut(s) 198, 405
Tru9I TTAA 2 cut(s) 198, 405
TscAI CASTG 1 cut(s) 73
TseI GCWGC 2 cut(s) 37, 415
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 1 cut(s) 73
Vha464I CTTAAG 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 125
XspI CTAG 2 cut(s) 9, 251
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.