Rroxscaffold_4G00313350

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000410
Physical Location & Seq
Reverse (-)
36732919 .. 36734468
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313350.1

Sequence Viewer

Length: 321 bp
ATGTTCGTTAGTGGGCCGTTGAATTTGCATCCTCGTGTAGTCGTGTTAACTGCACTTAGACTGTTCAAGTATGATCCTCCAAGCAAGACCAACTCAGGTTACAGCGTGTACTTGCTCCCCAACCTGTGGAGCTACATAACTTGTGACTTCAGCAAAGCCAAGATACTGGCGAGTGAGACCCGAGGAGATGGTGAGGGCTTTAAGGTTGAACTGAATCAATGGAGGCCTTATTACTTTGCTAGTGGTAACAAAGATGGCTACAATTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACGTTGGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

106

Amino Acids

12.16

Weight (kDa)

9.42

Isoelectric Point (pI)

26.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 126
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 3 cut(s) 22, 67, 209
AluBI AGCT 2 cut(s) 132, 286
AluI AGCT 2 cut(s) 132, 286
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 68
Ama87I CYCGRG 1 cut(s) 180
AoxI GGCC 2 cut(s) 14, 224
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 180
BauI CACGAG 1 cut(s) 33
BccI CCATC 3 cut(s) 182, 248, 266
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 28, 277
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 16, 226
BsiHKCI CYCGRG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 2 cut(s) 16, 226
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 180
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 2 cut(s) 16, 226
BspCNI CTCAG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 279
BspPI GGATC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 56, 94
BstF5I GGATG 2 cut(s) 28, 277
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 166
BsuRI GGCC 2 cut(s) 16, 226
BtsCI GGATG 2 cut(s) 28, 277
CciI TCATGA 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 280
CviJI RGCY 7 cut(s) 16, 132, 158, 198, 226, 258, 286
CviKI_1 RGCY 7 cut(s) 16, 132, 158, 198, 226, 258, 286
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 56, 94
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 180
FaeI CATG 1 cut(s) 283
FaiI YATR 3 cut(s) 72, 137, 281
FatI CATG 1 cut(s) 279
FokI GGATG 2 cut(s) 15, 284
FspBI CTAG 1 cut(s) 240
HaeIII GGCC 2 cut(s) 16, 226
Hin1II CATG 1 cut(s) 283
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 2 cut(s) 214, 276
HpaI GTTAAC 1 cut(s) 48
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 48, 109
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 2 cut(s) 48, 109
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 3 cut(s) 28, 53, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 2 cut(s) 56, 94
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 1 cut(s) 283
KspAI GTTAAC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 120, 129
LpnPI CCDG 3 cut(s) 81, 137, 152
LweI GCATC 1 cut(s) 37
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 3 cut(s) 98, 143, 245
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MfeI CAATTG 1 cut(s) 262
MluCI AATT 2 cut(s) 22, 262
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 5 cut(s) 42, 87, 176, 187, 216
MseI TTAA 2 cut(s) 47, 201
MslI CAYNNNNRTG 1 cut(s) 33
MunI CAATTG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 143
PagI TCATGA 1 cut(s) 279
PceI AGGCCT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 126
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 47, 201
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 270
SetI ASST 6 cut(s) 100, 126, 134, 207, 288, 310
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 33
Sse9I AATT 2 cut(s) 22, 262
SseBI AGGCCT 1 cut(s) 226
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 226
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 1 cut(s) 310
TasI AATT 2 cut(s) 22, 262
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 47, 201
Tru9I TTAA 2 cut(s) 47, 201
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 126
XapI RAATTY 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.