Rroxscaffold_7G00206190

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000410
Physical Location & Seq
Reverse (-)
55873993 .. 55874760
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206190.1

Sequence Viewer

Length: 519 bp
ATGGGTTCCAGTTTTGCACGAGCACTTTCTGCAATGCTGCTAATTGCTTCAATGGTGGCAGTTTGCACTGCCAACAAGGATTGGAAGCACGGGAACTACACCGGTTGGGGTTGGGGTTCTAACCATGGTCCATATCACCTTAACACGACAAACGGACCCAACAAGATCGTTGTGGGTGGTTCGGACTGGCATTATGGTTTTAACTACACAGATTGGTCTTTGAAAAATAACTCATTTTACGTCCAGGACACTCTAGTTTTCAAGTATGATCCACCAAACGACACCACACGTCCTCATAGCGTGTACTTGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTTAGCCAGGCCAGGATGGTGGGAAGTCCAACACAAGGAGGCGGAGACGGGTTTCAGTTCGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGTGAGCACGATGGTGCTCATTGTAAGGACGGAATGATGAGGTTCTTTGTCTTCCCCAAGCTCCGCGGCTGGCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

172

Amino Acids

19.51

Weight (kDa)

8.33

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 504
AciI CCGC 3 cut(s) 384, 502, 504
AclWI GGATC 1 cut(s) 263
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 287
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 3 cut(s) 51, 223, 262
AjiI CACGTC 1 cut(s) 290
AjnI CCWGG 3 cut(s) 243, 348, 353
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 3 cut(s) 327, 414, 499
AluI AGCT 3 cut(s) 327, 414, 499
Alw21I GWGCWC 4 cut(s) 25, 408, 447, 457
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 263
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 37, 418
AsiGI ACCGGT 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 128, 155
AsuHPI GGTGA 2 cut(s) 128, 452
AvaII GGWCC 2 cut(s) 128, 155
BauI CACGAG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 481
Bbv12I GWGCWC 4 cut(s) 25, 408, 447, 457
BbvI GCAGC 2 cut(s) 24, 430
BccI CCATC 2 cut(s) 352, 443
BciT130I CCWGG 3 cut(s) 245, 350, 355
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 1 cut(s) 254
BisI GCNGC 3 cut(s) 38, 419, 505
BlsI GCNGC 3 cut(s) 39, 420, 506
Bme1390I CCNGG 3 cut(s) 245, 350, 355
Bme18I GGWCC 2 cut(s) 128, 155
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 128, 155
BmiI GGNNCC 2 cut(s) 7, 157
BmrFI CCNGG 3 cut(s) 245, 350, 355
BpiI GAAGAC 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 124, 502
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 9, 191
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 3 cut(s) 245, 350, 355
BseDI CCNNGG 2 cut(s) 124, 502
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 9, 191
BseXI GCAGC 2 cut(s) 24, 430
Bsh1236I CGCG 1 cut(s) 504
BshFI GGCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 101
BsiHKAI GWGCWC 4 cut(s) 25, 408, 447, 457
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 381
BsmBI CGTCTC 1 cut(s) 381
BsnI GGCC 1 cut(s) 353
Bsp1286I GDGCHC 4 cut(s) 25, 408, 447, 457
Bsp143I GATC 2 cut(s) 165, 268
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 3 cut(s) 384, 502, 504
BspANI GGCC 1 cut(s) 353
BspFNI CGCG 1 cut(s) 504
BspLI GGNNCC 2 cut(s) 7, 157
BspPI GGATC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 2 cut(s) 9, 191
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 124, 502
BssMI GATC 2 cut(s) 165, 268
BssSI CACGAG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 3 cut(s) 245, 350, 355
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 416, 509
BstDSI CCRYGG 2 cut(s) 124, 502
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 2 cut(s) 168, 271
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 2 cut(s) 165, 268
BstMWI GCNNNNNNNGC 2 cut(s) 29, 345
BstNI CCWGG 3 cut(s) 245, 350, 355
BstSCI CCNGG 3 cut(s) 243, 348, 353
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 24, 430
BstV2I GAAGAC 1 cut(s) 481
BstXI CCANNNNNNTGG 2 cut(s) 321, 361
BsuRI GGCC 1 cut(s) 353
BtgI CCRYGG 2 cut(s) 124, 502
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 363
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 416, 509
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 128, 155
Cfr42I CCGCGG 1 cut(s) 505
Csp6I GTAC 1 cut(s) 304
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 125
CviJI RGCY 7 cut(s) 327, 348, 353, 414, 421, 499, 507
CviKI_1 RGCY 7 cut(s) 327, 348, 353, 414, 421, 499, 507
CviQI GTAC 1 cut(s) 304
DpnI GATC 2 cut(s) 167, 270
DpnII GATC 2 cut(s) 165, 268
EciI GGCGGA 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 128, 155
EcoRII CCWGG 3 cut(s) 243, 348, 353
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 1 cut(s) 128
FaiI YATR 6 cut(s) 126, 133, 195, 267, 297, 332
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 38, 419, 505
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 3 cut(s) 38, 419, 505
FspBI CTAG 1 cut(s) 254
GluI GCNGC 3 cut(s) 38, 419, 505
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 102
Hin1II CATG 1 cut(s) 128
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 128, 452
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 240, 289
HpyCH4V TGCA 3 cut(s) 17, 32, 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 345
HpySE526I ACGT 2 cut(s) 240, 289
Hsp92II CATG 1 cut(s) 128
KspI CCGCGG 1 cut(s) 505
Kzo9I GATC 2 cut(s) 165, 268
LmnI GCTCC 2 cut(s) 324, 504
Lsp1109I GCAGC 2 cut(s) 24, 430
MaeI CTAG 1 cut(s) 254
MaeII ACGT 2 cut(s) 240, 289
MalI GATC 2 cut(s) 167, 270
MboI GATC 2 cut(s) 165, 268
MboII GAAGA 1 cut(s) 481
MhlI GDGCHC 4 cut(s) 25, 408, 447, 457
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 3 cut(s) 303, 374, 471
MseI TTAA 2 cut(s) 141, 201
MslI CAYNNNNRTG 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 504
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 3 cut(s) 245, 350, 355
MvaI CCWGG 3 cut(s) 245, 350, 355
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 2 cut(s) 29, 345
NcoI CCATGG 1 cut(s) 124
NdeII GATC 2 cut(s) 165, 268
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 2 cut(s) 7, 157
OliI CACNNNNGTG 1 cut(s) 450
PfoI TCCNGGA 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 3 cut(s) 39, 420, 506
Psp6I CCWGG 3 cut(s) 243, 348, 353
PspGI CCWGG 3 cut(s) 243, 348, 353
PspN4I GGNNCC 2 cut(s) 7, 157
PspPI GGNCC 2 cut(s) 128, 155
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 450
SacII CCGCGG 1 cut(s) 505
SaqAI TTAA 2 cut(s) 141, 201
SatI GCNGC 3 cut(s) 38, 419, 505
Sau3AI GATC 2 cut(s) 165, 268
Sau96I GGNCC 2 cut(s) 128, 155
ScrFI CCNGG 3 cut(s) 245, 350, 355
SduI GDGCHC 4 cut(s) 25, 408, 447, 457
SetI ASST 8 cut(s) 141, 243, 292, 321, 329, 416, 482, 501
Sfr303I CCGCGG 1 cut(s) 505
SgrBI CCGCGG 1 cut(s) 505
SinI GGWCC 2 cut(s) 128, 155
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 1 cut(s) 42
SsiI CCGC 3 cut(s) 384, 502, 504
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 3 cut(s) 243, 348, 353
StyI CCWWGG 1 cut(s) 124
TaiI ACGT 2 cut(s) 243, 292
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 507
Tru1I TTAA 2 cut(s) 141, 201
Tru9I TTAA 2 cut(s) 141, 201
TscAI CASTG 1 cut(s) 73
TseI GCWGC 2 cut(s) 37, 418
TspDTI ATGAA 1 cut(s) 319
TspGWI ACGGA 2 cut(s) 168, 483
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 128, 155
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.