RLG00000029210

Plastocyanin-like domain protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
34581177 .. 34581988
812 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029210

Sequence Viewer

Length: 432 bp
ATGAATTACAGTCGTGCACAATTAGGGTTCATTCTCCTTGTAGCTGCTACTTCTCTGTTAGCAGCGAGTGAGGCCAAAACTATTGTCGTCGGAGGTTCTAAAGGCTGGCGTTTTGGTTTCAACTACACTGACTGGGCTCTCCAAAACAGTCCCTTTTACATCAACGATGAATTGGTGTTCAAGTATGGTCCGCCAAGCAAGACCAACTCTGGTTACAGCGTTTACTTGCTGCCAAACCTGTGGAGCTACATTACCTGTGATTTCAGCAAAGCCAAGATATTGGCAAGTGAGACTCAAGGAGGTGGTAAGGGCTTTAAGGTTGTGCTGAATCAATGGAGGCCTTACTACTTTGCTAGTGGTAACAAGGATGGCTACAACTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACATTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

15.97

Weight (kDa)

9.32

Isoelectric Point (pI)

29.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AgsI TTSAA 2 cut(s) 121, 181
AluBI AGCT 3 cut(s) 44, 246, 400
AluI AGCT 3 cut(s) 44, 246, 400
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 284
Alw44I GTGCAC 1 cut(s) 15
AoxI GGCC 2 cut(s) 72, 338
ApaLI GTGCAC 1 cut(s) 15
ApeKI GCWGC 3 cut(s) 44, 62, 229
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 31, 74, 216
BccI CCATC 2 cut(s) 362, 380
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 354
BisI GCNGC 3 cut(s) 45, 63, 230
BlsI GCNGC 3 cut(s) 46, 64, 231
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmrI ACTGGG 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 373, 391
BseNI ACTGG 1 cut(s) 137
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 3 cut(s) 31, 74, 216
BshFI GGCC 2 cut(s) 74, 340
BsiHKAI GWGCWC 1 cut(s) 19
BslFI GGGAC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 74, 340
Bsp1286I GDGCHC 2 cut(s) 19, 139
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 74, 340
BspHI TCATGA 1 cut(s) 393
BsrI ACTGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 11, 149
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 2 cut(s) 373, 391
BstMAI GTCTC 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 71, 378
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 31, 74, 216
BstXI CCANNNNNNTGG 2 cut(s) 240, 280
BsuRI GGCC 2 cut(s) 74, 340
BtsCI GGATG 2 cut(s) 373, 391
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 107
CciI TCATGA 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 1 cut(s) 394
EciI GGCGGA 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 1 cut(s) 397
FaiI YATR 2 cut(s) 186, 395
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 45, 63, 230
FokI GGATG 2 cut(s) 380, 398
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 45, 63, 230
FspBI CTAG 1 cut(s) 354
GluI GCNGC 3 cut(s) 45, 63, 230
HaeIII GGCC 2 cut(s) 74, 340
Hin1II CATG 1 cut(s) 397
HinfI GANTC 3 cut(s) 292, 328, 390
Hpy166II GTNNAC 2 cut(s) 17, 223
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 1 cut(s) 394
Hpy8I GTNNAC 2 cut(s) 17, 223
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 11, 149
HpyCH4V TGCA 2 cut(s) 17, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 378
Hsp92II CATG 1 cut(s) 397
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 5 cut(s) 91, 118, 195, 251, 268
Lsp1109I GCAGC 3 cut(s) 31, 74, 216
MaeI CTAG 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 212, 359
MhlI GDGCHC 2 cut(s) 19, 139
MluCI AATT 4 cut(s) 4, 20, 170, 427
MlyI GAGTC 2 cut(s) 286, 384
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 64, 86, 293, 330
MseI TTAA 2 cut(s) 315, 430
MwoI GCNNNNNNNGC 2 cut(s) 71, 378
NlaIII CATG 1 cut(s) 397
PagI TCATGA 1 cut(s) 393
PceI AGGCCT 1 cut(s) 340
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 3 cut(s) 46, 64, 231
PleI GAGTC 2 cut(s) 286, 384
PpsI GAGTC 2 cut(s) 286, 384
PspPI GGNCC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 315, 430
SatI GCNGC 3 cut(s) 45, 63, 230
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 286, 384
SduI GDGCHC 2 cut(s) 19, 139
SetI ASST 8 cut(s) 46, 97, 240, 248, 257, 304, 321, 402
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
Sse9I AATT 4 cut(s) 4, 20, 170, 427
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 354
StuI AGGCCT 1 cut(s) 340
TaaI ACNGT 2 cut(s) 11, 149
TasI AATT 4 cut(s) 4, 20, 170, 427
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 315, 430
Tru9I TTAA 2 cut(s) 315, 430
TscAI CASTG 1 cut(s) 133
TseI GCWGC 3 cut(s) 44, 62, 229
TspDTI ATGAA 4 cut(s) 17, 19, 183, 410
TspRI CASTG 1 cut(s) 133
VneI GTGCAC 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 420
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.