RLG00000014569

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000410
Physical Location & Seq
Forward (+)
54861628 .. 54862361
734 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014569

Sequence Viewer

Length: 486 bp
ATGCTGCTAATTGCTTCAATGGTGGCAGTTTGCACTGCCAACAAGGATTGGAAGCACGGGAACTACACCGGTTGGGGTTGGGGTTCTAACCATGGTCCATATCACCTTAACACGACAAACGGACCCAACAAGATCGTTGTGGGTGGTTCGGACTGGCATTATGGTTTTAACTACGCAGATTGGTCTTTGAAAAATAACTCATTTTACGTCCAGGACACTCTAGTTTTCAAGTATGATCCACCAAACGACACCACACGTCCTCATAGCGTGTACTTGCTACCAAACCTTTGGAGCTTCATAAACTGCGACTTTAGCCAGGCCAGGATGGTGGGAAGTCCAACACAAGGAGGCGGAGACGGGTTTCAGTTCGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGTGAGCACGATGGTGCTCATTGTAAGGACGGAATGATGAGGTTCTTTGTCTTCCCCAAGCTCCGCGGCTGGCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

162

Amino Acids

18.4

Weight (kDa)

7.73

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 471
AciI CCGC 3 cut(s) 351, 469, 471
AclWI GGATC 1 cut(s) 230
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 254
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 3 cut(s) 18, 190, 229
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 3 cut(s) 210, 315, 320
AleI CACNNNNGTG 1 cut(s) 417
AluBI AGCT 3 cut(s) 294, 381, 466
AluI AGCT 3 cut(s) 294, 381, 466
Alw21I GWGCWC 3 cut(s) 375, 414, 424
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 1 cut(s) 230
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 4, 385
AsiGI ACCGGT 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 95, 122
AsuHPI GGTGA 2 cut(s) 95, 419
AvaII GGWCC 2 cut(s) 95, 122
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 3 cut(s) 375, 414, 424
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 319, 410
BciT130I CCWGG 3 cut(s) 212, 317, 322
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 221
BisI GCNGC 3 cut(s) 5, 386, 472
BlsI GCNGC 3 cut(s) 6, 387, 473
Bme1390I CCNGG 3 cut(s) 212, 317, 322
Bme18I GGWCC 2 cut(s) 95, 122
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 95, 122
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 212, 317, 322
BpiI GAAGAC 1 cut(s) 448
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 91, 469
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 158
BseBI CCWGG 3 cut(s) 212, 317, 322
BseDI CCNNGG 2 cut(s) 91, 469
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 3 cut(s) 375, 414, 424
BsiSI CCGG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 348
BsmBI CGTCTC 1 cut(s) 348
BsnI GGCC 1 cut(s) 320
Bsp1286I GDGCHC 3 cut(s) 375, 414, 424
Bsp143I GATC 2 cut(s) 132, 235
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 3 cut(s) 351, 469, 471
BspANI GGCC 1 cut(s) 320
BspFNI CGCG 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 91, 469
BssMI GATC 2 cut(s) 132, 235
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 3 cut(s) 212, 317, 322
BstC8I GCNNGC 2 cut(s) 383, 476
BstDSI CCRYGG 2 cut(s) 91, 469
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 471
BstKTI GATC 2 cut(s) 135, 238
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 132, 235
BstMWI GCNNNNNNNGC 1 cut(s) 312
BstNI CCWGG 3 cut(s) 212, 317, 322
BstSCI CCNGG 3 cut(s) 210, 315, 320
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 448
BstXI CCANNNNNNTGG 2 cut(s) 288, 328
BsuRI GGCC 1 cut(s) 320
BtgI CCRYGG 2 cut(s) 91, 469
BtrI CACGTC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 383, 476
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 95, 122
Cfr42I CCGCGG 1 cut(s) 472
Csp6I GTAC 1 cut(s) 271
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 1 cut(s) 92
CviJI RGCY 7 cut(s) 294, 315, 320, 381, 388, 466, 474
CviKI_1 RGCY 7 cut(s) 294, 315, 320, 381, 388, 466, 474
CviQI GTAC 1 cut(s) 271
DpnI GATC 2 cut(s) 134, 237
DpnII GATC 2 cut(s) 132, 235
EciI GGCGGA 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 95, 122
EcoRII CCWGG 3 cut(s) 210, 315, 320
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 1 cut(s) 95
FaiI YATR 6 cut(s) 93, 100, 162, 234, 264, 299
FatI CATG 1 cut(s) 91
Fnu4HI GCNGC 3 cut(s) 5, 386, 472
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 3 cut(s) 5, 386, 472
FspBI CTAG 1 cut(s) 221
GluI GCNGC 3 cut(s) 5, 386, 472
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 69
Hin1II CATG 1 cut(s) 95
HpaII CCGG 1 cut(s) 69
HphI GGTGA 2 cut(s) 95, 419
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 207, 256
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 312
HpySE526I ACGT 2 cut(s) 207, 256
Hsp92II CATG 1 cut(s) 95
KspI CCGCGG 1 cut(s) 472
Kzo9I GATC 2 cut(s) 132, 235
LmnI GCTCC 2 cut(s) 291, 471
Lsp1109I GCAGC 1 cut(s) 397
MaeI CTAG 1 cut(s) 221
MaeII ACGT 2 cut(s) 207, 256
MalI GATC 2 cut(s) 134, 237
MboI GATC 2 cut(s) 132, 235
MboII GAAGA 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 375, 414, 424
MluCI AATT 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 3 cut(s) 270, 341, 438
MseI TTAA 2 cut(s) 108, 168
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 471
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 3 cut(s) 212, 317, 322
MvaI CCWGG 3 cut(s) 212, 317, 322
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 312
NcoI CCATGG 1 cut(s) 91
NdeII GATC 2 cut(s) 132, 235
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 3 cut(s) 6, 387, 473
Psp6I CCWGG 3 cut(s) 210, 315, 320
PspGI CCWGG 3 cut(s) 210, 315, 320
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 95, 122
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 417
SacII CCGCGG 1 cut(s) 472
SaqAI TTAA 2 cut(s) 108, 168
SatI GCNGC 3 cut(s) 5, 386, 472
Sau3AI GATC 2 cut(s) 132, 235
Sau96I GGNCC 2 cut(s) 95, 122
ScrFI CCNGG 3 cut(s) 212, 317, 322
SduI GDGCHC 3 cut(s) 375, 414, 424
SetI ASST 8 cut(s) 108, 210, 259, 288, 296, 383, 449, 468
Sfr303I CCGCGG 1 cut(s) 472
SgrBI CCGCGG 1 cut(s) 472
SinI GGWCC 2 cut(s) 95, 122
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 1 cut(s) 9
SsiI CCGC 3 cut(s) 351, 469, 471
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 3 cut(s) 210, 315, 320
StyI CCWWGG 1 cut(s) 91
TaiI ACGT 2 cut(s) 210, 259
TasI AATT 1 cut(s) 9
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 474
Tru1I TTAA 2 cut(s) 108, 168
Tru9I TTAA 2 cut(s) 108, 168
TscAI CASTG 1 cut(s) 40
TseI GCWGC 2 cut(s) 4, 385
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 2 cut(s) 135, 450
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 95, 122
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.