RLG00000029216

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000410
Physical Location & Seq
Reverse (-)
34667458 .. 34668250
793 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029216

Sequence Viewer

Length: 438 bp
ATGGCTTTGATTAGGAGTGCACAATTAGGGTTCATTCTCCTTGTAGCTACTGCTTCTCTATTAGAAGTGAGCGAGGCCAAAACTATTGTCGTCGGCGGTTCTGAAGGCTGGCGTTTTGGTTTCAACTACACTGATTGGGCTCTCCAAAACAGTCCTTTTTACATAAATGATGAACTGGTGTTCAAGTATGATCCTCCGAGCAAGACCAACTCAGGTTACAGCGTGTACTTGCTCCCCAACCTGTGGAGCTACATAACTTGTGACTTCAGCAAAGCCAAGATACTGGCGAGTGAGACCCGAGGAGATGGTGAGGGCTTTAAGGTTGAACTGAATCAATGGAGGCCTTATTACTTTGCTAGTGGTAACAAAGATGGCTACAATTGCAAGGATGGACTCATGAAGCTCTTTGCCGTGCCACTTCCACGTTGGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

146

Amino Acids

16.45

Weight (kDa)

7.67

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 185
AcuI CTGAAG 2 cut(s) 123, 250
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 124, 184, 326
AluBI AGCT 3 cut(s) 47, 249, 403
AluI AGCT 3 cut(s) 47, 249, 403
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 287
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 2 cut(s) 75, 341
ApaLI GTGCAC 1 cut(s) 18
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AsuHPI GGTGA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 22
BccI CCATC 3 cut(s) 299, 365, 383
BceAI ACGGC 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 180, 288
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 180, 288
BseRI GAGGAG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 2 cut(s) 77, 343
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 2 cut(s) 77, 343
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 22, 142
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 77, 343
BspCNI CTCAG 1 cut(s) 224
BspHI TCATGA 1 cut(s) 396
BspPI GGATC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 287
BsrI ACTGG 2 cut(s) 180, 288
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 283
BsuRI GGCC 2 cut(s) 77, 343
BtsCI GGATG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 396
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 397
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 123, 250
Eco88I CYCGRG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 400
FaiI YATR 4 cut(s) 164, 189, 254, 398
FatI CATG 1 cut(s) 396
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 142
FspBI CTAG 1 cut(s) 357
HaeIII GGCC 2 cut(s) 77, 343
Hin1II CATG 1 cut(s) 400
HinfI GANTC 2 cut(s) 331, 393
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 20, 226
Hpy188I TCNGA 2 cut(s) 103, 198
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 2 cut(s) 20, 226
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 20, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 1 cut(s) 400
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 237, 246
LpnPI CCDG 5 cut(s) 94, 161, 198, 254, 269
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 215, 260, 362
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MfeI CAATTG 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 22, 142
MluCI AATT 2 cut(s) 23, 379
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 1 cut(s) 407
MnlI CCTC 5 cut(s) 67, 204, 293, 304, 333
MseI TTAA 1 cut(s) 318
MunI CAATTG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 381
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 260
PagI TCATGA 1 cut(s) 396
PceI AGGCCT 1 cut(s) 343
PfeI GAWTC 1 cut(s) 331
PflMI CCANNNNNTGG 1 cut(s) 243
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 387
SduI GDGCHC 2 cut(s) 22, 142
SetI ASST 7 cut(s) 49, 217, 243, 251, 324, 405, 427
Sse9I AATT 2 cut(s) 23, 379
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 357
StuI AGGCCT 1 cut(s) 343
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 427
TasI AATT 2 cut(s) 23, 379
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 22, 186, 413
TspRI CASTG 1 cut(s) 136
Van91I CCANNNNNTGG 1 cut(s) 243
VneI GTGCAC 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 423
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.