Rh6BG093200

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000410
Physical Location & Seq
Reverse (-)
14689844 .. 14690544
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG093200.1

Sequence Viewer

Length: 489 bp
ATGGCTTCCACGTTTGCACAAGCCCTTTTTGCAATGCTGCTAATTGCTTCAATGGTAGCAGTTAGCACAGCCAACAACAAGGATTGGCAGCATGGTCCATTTCACCTCAACAAGACAGAAGGACCCAACAAGATCATTGTTGGTGGCTCCGAAAATTGGCATTATGGTTTTAACTATGCAGATTGGTCTTTGAAAAATGCCTCATTTTACGTCCACGACACTCTGATTTTCAAGTATGATCCGCCAAATAATACCACACCTCCTCACAGCGTGTACATGCTACCAAACCTTTGGAGCTTCATACACTGCGACTTAAGCAAGGCCAAGATGGTGGGAAGTCCAACACAAGGAGGTGGAAACGGCTTTGAGTTTGTGCTCAAGAGCTCGCGGCCTTACTACTTTGCTTGTGGCGAGCACAATGGTACACATTGTAAAGACGGAATGATGAGGTTCTTCGTGTTCCCAAAGCTTCGCGGCTGGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

162

Amino Acids

18.35

Weight (kDa)

8.75

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 388, 474
AciI CCGC 3 cut(s) 242, 388, 474
AclWI GGATC 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 2 cut(s) 275, 424
AfiI CCNNNNNNNGG 2 cut(s) 156, 347
AflII CTTAAG 1 cut(s) 313
AgsI TTSAA 3 cut(s) 51, 193, 232
AluBI AGCT 3 cut(s) 297, 384, 469
AluI AGCT 3 cut(s) 297, 384, 469
Alw21I GWGCWC 3 cut(s) 378, 386, 417
AlwI GGATC 1 cut(s) 233
AoxI GGCC 2 cut(s) 321, 389
ApeKI GCWGC 2 cut(s) 37, 88
AspS9I GGNCC 2 cut(s) 95, 122
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 2 cut(s) 95, 122
BanII GRGCYC 1 cut(s) 386
Bbv12I GWGCWC 3 cut(s) 378, 386, 417
BbvI GCAGC 2 cut(s) 24, 100
BccI CCATC 1 cut(s) 322
BceAI ACGGC 1 cut(s) 376
BfrI CTTAAG 1 cut(s) 313
BisI GCNGC 4 cut(s) 38, 89, 389, 475
BlsI GCNGC 4 cut(s) 39, 90, 390, 476
Bme18I GGWCC 2 cut(s) 95, 122
BmgT120I GGNCC 2 cut(s) 95, 122
BmiI GGNNCC 2 cut(s) 124, 148
BpuEI CTTGAG 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 347
Bse3DI GCAATG 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 156, 347
BseMI GCAATG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 24, 100
Bsh1236I CGCG 2 cut(s) 388, 474
BshFI GGCC 2 cut(s) 323, 391
BsiHKAI GWGCWC 3 cut(s) 378, 386, 417
BslI CCNNNNNNNGG 2 cut(s) 156, 347
BsnI GGCC 2 cut(s) 323, 391
Bsp1286I GDGCHC 3 cut(s) 378, 386, 417
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 2 cut(s) 132, 238
BspACI CCGC 3 cut(s) 242, 388, 474
BspANI GGCC 2 cut(s) 323, 391
BspFNI CGCG 2 cut(s) 388, 474
BspLI GGNNCC 2 cut(s) 124, 148
BspPI GGATC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 273
BssMI GATC 2 cut(s) 132, 238
BstAFI CTTAAG 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 386, 413, 479
BstFNI CGCG 2 cut(s) 388, 474
BstKTI GATC 2 cut(s) 135, 241
BstMBI GATC 2 cut(s) 132, 238
BstMWI GCNNNNNNNGC 2 cut(s) 29, 315
BstNSI RCATGY 1 cut(s) 280
BstUI CGCG 2 cut(s) 388, 474
BstV1I GCAGC 2 cut(s) 24, 100
BstXI CCANNNNNNTGG 2 cut(s) 291, 331
BsuRI GGCC 2 cut(s) 323, 391
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 3 cut(s) 386, 413, 479
Cfr13I GGNCC 2 cut(s) 95, 122
Csp6I GTAC 2 cut(s) 274, 423
CviAII CATG 2 cut(s) 92, 277
CviQI GTAC 2 cut(s) 274, 423
DpnI GATC 2 cut(s) 134, 240
DpnII GATC 2 cut(s) 132, 238
DraIII CACNNNGTG 1 cut(s) 271
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 2 cut(s) 95, 122
Eco53kI GAGCTC 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 386
FaeI CATG 2 cut(s) 95, 280
FaiI YATR 6 cut(s) 93, 165, 177, 237, 278, 302
FatI CATG 2 cut(s) 91, 276
Fnu4HI GCNGC 4 cut(s) 38, 89, 389, 475
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 4 cut(s) 38, 89, 389, 475
GluI GCNGC 4 cut(s) 38, 89, 389, 475
HaeIII GGCC 2 cut(s) 323, 391
Hin1II CATG 2 cut(s) 95, 280
HindIII AAGCTT 1 cut(s) 467
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 214, 274, 425
Hpy188I TCNGA 2 cut(s) 151, 225
Hpy188III TCNNGA 1 cut(s) 379
Hpy8I GTNNAC 3 cut(s) 214, 274, 425
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 11, 210
HpyCH4V TGCA 3 cut(s) 17, 32, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 315
HpySE526I ACGT 2 cut(s) 11, 210
Hsp92II CATG 2 cut(s) 95, 280
Kzo9I GATC 2 cut(s) 132, 238
LmnI GCTCC 2 cut(s) 152, 294
LpnPI CCDG 1 cut(s) 463
Lsp1109I GCAGC 2 cut(s) 24, 100
MaeII ACGT 2 cut(s) 11, 210
MalI GATC 2 cut(s) 134, 240
MboI GATC 2 cut(s) 132, 238
MboII GAAGA 1 cut(s) 445
MhlI GDGCHC 3 cut(s) 378, 386, 417
MluCI AATT 2 cut(s) 42, 154
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 6 cut(s) 116, 211, 270, 273, 344, 441
MseI TTAA 2 cut(s) 171, 314
MspCI CTTAAG 1 cut(s) 313
MvnI CGCG 2 cut(s) 388, 474
MwoI GCNNNNNNNGC 2 cut(s) 29, 315
NdeII GATC 2 cut(s) 132, 238
NlaIII CATG 2 cut(s) 95, 280
NlaIV GGNNCC 2 cut(s) 124, 148
NspI RCATGY 1 cut(s) 280
PkrI GCNGC 4 cut(s) 39, 90, 390, 476
PpuMI RGGWCCY 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 124, 148
PspPI GGNCC 2 cut(s) 95, 122
PspPPI RGGWCCY 1 cut(s) 122
RsaI GTAC 2 cut(s) 275, 424
RsaNI GTAC 2 cut(s) 274, 423
SacI GAGCTC 1 cut(s) 386
SaqAI TTAA 2 cut(s) 171, 314
SatI GCNGC 4 cut(s) 38, 89, 389, 475
Sau3AI GATC 2 cut(s) 132, 238
Sau96I GGNCC 2 cut(s) 95, 122
SduI GDGCHC 3 cut(s) 378, 386, 417
SinI GGWCC 2 cut(s) 95, 122
SmlI CTYRAG 2 cut(s) 313, 377
SmoI CTYRAG 2 cut(s) 313, 377
Sse9I AATT 2 cut(s) 42, 154
SsiI CCGC 3 cut(s) 242, 388, 474
SstI GAGCTC 1 cut(s) 386
TaiI ACGT 2 cut(s) 14, 213
TasI AATT 2 cut(s) 42, 154
TatI WGTACW 1 cut(s) 273
TauI GCSGC 2 cut(s) 391, 477
Tru1I TTAA 2 cut(s) 171, 314
Tru9I TTAA 2 cut(s) 171, 314
TscAI CASTG 1 cut(s) 311
TseI GCWGC 2 cut(s) 37, 88
TspDTI ATGAA 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 95, 122
XceI RCATGY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.