Prupe.8G117000_v2.0.a1

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000410
Physical Location & Seq
Forward (+)
14392127 .. 14393155
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G117000.1

Sequence Viewer

Length: 510 bp
ATGATGGGTTCCCATTATTTTGCACAAGCCCTAGCAATGGTGCTAATTGCTTCAATGCTGGCAGTCGGCTTAGCCAATAAGGATTGGCAACAAGGCAACTACACTGGTTGGGGTTTCAACCATGGCCTTAACGAGACCAAAGGACCCAACAAAATCACAGTTGGTGGGTCAGAAAACTGGCATTACGGATTTAACTACAAACAGTGGGCTTTGCAGAATGGCCCATTTTACATCAAGGATACTCTAGTTTTCAAGTATGATCCCCCAAATGACACCACACGTCCTCACAGCGTGTACTTGTTTCAAAACCCTTGGAGCTTCATGAACTGTGACTTAAGCCAAGCTAGGATGGTTGGAAATCAGACACAAGGAGGAGGAGAAGGCTTTGAGTTTGTGCTCAAGAAGTGGAAGCCTTACTACTTCGCTTGCGGCGAGCACGACGGCCATCATTGTAATGAAGGACTGATGAGGTTCATCGTCTTCCCAATGTATCGTGGCTGGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

170

Amino Acids

19.5

Weight (kDa)

7.76

Isoelectric Point (pI)

28.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 442
AdeI CACNNNGTG 1 cut(s) 292
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 4 cut(s) 54, 118, 253, 305
AjiI CACGTC 1 cut(s) 281
AluBI AGCT 2 cut(s) 318, 344
AluI AGCT 2 cut(s) 318, 344
Alw21I GWGCWC 2 cut(s) 399, 438
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 254
AoxI GGCC 3 cut(s) 124, 220, 442
AspS9I GGNCC 2 cut(s) 143, 221
AvaII GGWCC 1 cut(s) 143
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 2 cut(s) 399, 438
BccI CCATC 2 cut(s) 343, 453
BceAI ACGGC 1 cut(s) 457
BciVI GTATCC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 3 cut(s) 32, 245, 345
BfrI CTTAAG 1 cut(s) 334
BfuI GTATCC 1 cut(s) 232
BisI GCNGC 1 cut(s) 430
BlpI GCTNAGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 143, 221
BmiI GGNNCC 2 cut(s) 10, 145
BpiI GAAGAC 1 cut(s) 472
Bpu1102I GCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 121, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 109, 182
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 121, 311
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 109, 182
BseRI GAGGAG 2 cut(s) 387, 390
BshFI GGCC 3 cut(s) 126, 222, 444
BsiHKAI GWGCWC 2 cut(s) 399, 438
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 3 cut(s) 126, 222, 444
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 399, 438
Bsp143I GATC 1 cut(s) 259
Bsp1720I GCTNAGC 1 cut(s) 70
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 1 cut(s) 429
BspANI GGCC 3 cut(s) 126, 222, 444
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 10, 145
BspPI GGATC 1 cut(s) 254
BspTI CTTAAG 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 2 cut(s) 109, 182
BssECI CCNNGG 2 cut(s) 121, 311
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 121, 311
Bst4CI ACNGT 3 cut(s) 160, 204, 329
BstAFI CTTAAG 1 cut(s) 334
BstC8I GCNNGC 4 cut(s) 60, 427, 434, 500
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 472
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 3 cut(s) 126, 222, 444
BtgI CCRYGG 1 cut(s) 121
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 102, 209
Cac8I GCNNGC 4 cut(s) 60, 427, 434, 500
CciI TCATGA 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 143, 221
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 122, 322
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 70
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
DraIII CACNNNGTG 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 442
Eco130I CCWWGG 2 cut(s) 121, 311
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 121, 311
ErhI CCWWGG 2 cut(s) 121, 311
FaeI CATG 2 cut(s) 125, 325
FaiI YATR 3 cut(s) 123, 258, 323
FatI CATG 2 cut(s) 121, 321
Fnu4HI GCNGC 1 cut(s) 430
FokI GGATG 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 430
FspBI CTAG 3 cut(s) 32, 245, 345
GluI GCNGC 1 cut(s) 430
HaeIII GGCC 3 cut(s) 126, 222, 444
Hin1II CATG 2 cut(s) 125, 325
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 172, 363
Hpy188III TCNNGA 2 cut(s) 322, 400
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 374, 452
HpyCH4III ACNGT 3 cut(s) 160, 204, 329
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 23, 214
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 2 cut(s) 125, 325
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 4 cut(s) 44, 90, 163, 484
MaeI CTAG 3 cut(s) 32, 245, 345
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 329
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 399, 438
MluCI AATT 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 4 cut(s) 294, 365, 368, 462
MseI TTAA 3 cut(s) 129, 192, 335
MslI CAYNNNNRTG 1 cut(s) 453
MspCI CTTAAG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 121
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 125, 325
NlaIV GGNNCC 2 cut(s) 10, 145
NmuCI GTSAC 1 cut(s) 329
PagI TCATGA 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PkrI GCNGC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 143
Psp5II RGGWCCY 1 cut(s) 143
PspN4I GGNNCC 2 cut(s) 10, 145
PspPI GGNCC 2 cut(s) 143, 221
PspPPI RGGWCCY 1 cut(s) 143
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 453
SaqAI TTAA 3 cut(s) 129, 192, 335
SatI GCNGC 1 cut(s) 430
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 2 cut(s) 143, 221
SduI GDGCHC 2 cut(s) 399, 438
SetI ASST 4 cut(s) 283, 320, 346, 473
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 334, 398
SmoI CTYRAG 2 cut(s) 334, 398
Sse9I AATT 1 cut(s) 45
SsiI CCGC 1 cut(s) 429
SspMI CTAG 3 cut(s) 32, 245, 345
StyI CCWWGG 2 cut(s) 121, 311
TaaI ACNGT 3 cut(s) 160, 204, 329
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 45
TatI WGTACW 1 cut(s) 294
TauI GCSGC 1 cut(s) 432
Tru1I TTAA 3 cut(s) 129, 192, 335
Tru9I TTAA 3 cut(s) 129, 192, 335
TscAI CASTG 2 cut(s) 109, 209
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 310, 338, 463, 471
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 2 cut(s) 109, 209
Vha464I CTTAAG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 143
XspI CTAG 3 cut(s) 32, 245, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.