RchiOBHm_Chr1g0339021

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000410
Physical Location & Seq
Reverse (-)
30301894 .. 30302718
825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56599

Sequence Viewer

Length: 441 bp
ATGGGTTTGATGAATTACAGTCGTGCACAATTAGGGTTCATTCTCCTTGTAGCTGCTACTTCTCTGTTAGCAGTGAGTGAGGCCAAAACTATTGTCGTCGGAGGTTCTGAAGGCTGGCGTTTTGGTTTCAACTACACTGACTGGGCTCTCCAAAACAGTCCCTTTTACATCAACGATGAATTGGTGTTCAAGTATGGTCCGCCAAGCAAGACCAACTCTGGTTACAGCGTTTACTTGCTCCCAAACCTGTGGAGCTACATTACCTGTGATTTCAGCAAAGCCAAGATATTGGCGAGTGAGACTCAAGGAGGTGGTAAGGGCTTTAAGGTTGTGCTGAATCAATGGAGGCCTTACTACTTTGCTAGTGGTAACAAGGATGGCTACAATTGCAAGGATGGACTCATGAAGCTCTTTGCTGTGCCACTTCCACATTGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

146

Amino Acids

16.3

Weight (kDa)

9.04

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 2 cut(s) 130, 190
AluBI AGCT 3 cut(s) 53, 255, 409
AluI AGCT 3 cut(s) 53, 255, 409
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 293
Alw44I GTGCAC 1 cut(s) 24
AoxI GGCC 2 cut(s) 81, 347
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspS9I GGNCC 1 cut(s) 197
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 371, 389
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 286, 318
BpuEI CTTGAG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 382, 400
BseNI ACTGG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 83, 349
BsiHKAI GWGCWC 1 cut(s) 28
BslFI GGGAC 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 2 cut(s) 83, 349
Bsp1286I GDGCHC 2 cut(s) 28, 148
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 83, 349
BspHI TCATGA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 20, 158
BstC8I GCNNGC 1 cut(s) 116
BstF5I GGATG 2 cut(s) 382, 400
BstMAI GTCTC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 40
BstXI CCANNNNNNTGG 2 cut(s) 249, 289
BsuRI GGCC 2 cut(s) 83, 349
BtsCI GGATG 2 cut(s) 382, 400
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 135
Cac8I GCNNGC 1 cut(s) 116
CciI TCATGA 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 197
CviAII CATG 1 cut(s) 403
EciI GGCGGA 1 cut(s) 189
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 1 cut(s) 406
FaiI YATR 2 cut(s) 195, 404
FaqI GGGAC 1 cut(s) 144
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 389, 407
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 83, 349
Hin1II CATG 1 cut(s) 406
HinfI GANTC 3 cut(s) 301, 337, 399
Hpy166II GTNNAC 2 cut(s) 26, 232
Hpy188I TCNGA 2 cut(s) 101, 109
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 2 cut(s) 26, 232
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 20, 158
HpyCH4V TGCA 2 cut(s) 26, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
Hsp92II CATG 1 cut(s) 406
LmnI GCTCC 2 cut(s) 243, 252
LpnPI CCDG 5 cut(s) 100, 127, 204, 260, 277
Lsp1109I GCAGC 1 cut(s) 40
MaeI CTAG 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 221, 368
MfeI CAATTG 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 28, 148
MluCI AATT 5 cut(s) 13, 29, 179, 385, 436
MlyI GAGTC 2 cut(s) 295, 393
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 73, 95, 302, 339
MseI TTAA 2 cut(s) 324, 439
MunI CAATTG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 387
NlaIII CATG 1 cut(s) 406
PagI TCATGA 1 cut(s) 402
PceI AGGCCT 1 cut(s) 349
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 295, 393
PpsI GAGTC 2 cut(s) 295, 393
PspPI GGNCC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 324, 439
SatI GCNGC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 295, 393
SduI GDGCHC 2 cut(s) 28, 148
SetI ASST 8 cut(s) 55, 106, 249, 257, 266, 313, 330, 411
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 5 cut(s) 13, 29, 179, 385, 436
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 349
TaaI ACNGT 2 cut(s) 20, 158
TasI AATT 5 cut(s) 13, 29, 179, 385, 436
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 2 cut(s) 324, 439
Tru9I TTAA 2 cut(s) 324, 439
TscAI CASTG 2 cut(s) 78, 142
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 4 cut(s) 26, 28, 192, 419
TspRI CASTG 2 cut(s) 78, 142
VneI GTGCAC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.