Rroxscaffold_7G00206220

Plastocyanin-like domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000410
Physical Location & Seq
Reverse (-)
55918848 .. 55919687
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206220.1

Sequence Viewer

Length: 465 bp
ATGGTAGCAGTTAGCACATCCAACAAGGATTGGCAGCAGGGGAACTACACTGGCTGGGGTTTCAACCGTGGTCCATATCACCTCAACAAGACAGAAGGACCCAACAAGATCATTGTTGGTGGCTCCGAAAATTGGCATTATGGTTTTAACTATGCAGATTGGTCTCTTAAAAATGCCTCATTTTACGTCCACGACACTCTAGTTTTCAAGTATGATCCACCAACCAACAGCACACGTCCTCACAGCGTGTACTTGCTACCAAACCTCTGGAGCTTCATAAACTGCGACTTAAGCCACGCCAAGATGGTGGGAAGTCCGACACAAGGAGGCGGAAACGGCTTTGAGTTTGTGCTCAAGAGCTGGCAGCCTTACTACTTCGCTTGTGGCGAGCATGGTGGTGCTCATTGTAAAGATGGAATGATGAGGTTCTTCGTCTTCCCAAAGCTTCGCGGCTGGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

154

Amino Acids

17.61

Weight (kDa)

8.73

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15780
fragaria_vesca FvH4_2g06770 FvH4_2g06770 FvH4_2g06780 FvH4_2g06780 FvH4_2g06780 FvH4_2g10150 FvH4_2g35020 FvH4_2g35560
malus_domestica MD01G1045100.v1.1 MD08G1107500.v1.1 MD10G1089800.v1.1
prunus_persica Prupe.1G390400_v2.0.a1 Prupe.1G441800_v2.0.a1 Prupe.8G116800_v2.0.a1 Prupe.8G116900_v2.0.a1 Prupe.8G117000_v2.0.a1
pyrus_communis pycom05g18710 pycom10g07320 pycom15g08270
rosa_chinensis RchiOBHm_Chr1g0339021 RchiOBHm_Chr1g0339151 RchiOBHm_Chr1g0339191 RchiOBHm_Chr1g0339241 RchiOBHm_Chr6g0258941 RchiOBHm_Chr6g0258971 RchiOBHm_Chr6g0258981 RchiOBHm_Chr6g0259001 RchiOBHm_Chr6g0306981
rosa_laevigata RLG00000010749 RLG00000014565 RLG00000014566 RLG00000014567 RLG00000014569 RLG00000029210 RLG00000029213 RLG00000029216 RLG00000029220
rosa_multiflora Rmu_co8402997.1_g000001 Rmu_co8497247.1_g000001 Rmu_sc0002571.1_g000005 Rmu_sc0002571.1_g000008 Rmu_sc0002571.1_g000015 Rmu_sc0002571.1_g000023 Rmu_sc0003303.1_g000010 Rmu_sc0003303.1_g000023 Rmu_sc0007920.1_g000038 Rmu_ssc0000050.1_g000119 Rmu_ssc0000050.1_g000120 Rmu_ssc0000050.1_g000122 Rmu_ssc0000141.1_g000012
rosa_roxburghii Rroxscaffold_4G00313340 Rroxscaffold_4G00313350 Rroxscaffold_4G00313370 Rroxscaffold_7G00161300 Rroxscaffold_7G00206190 Rroxscaffold_7G00206200 Rroxscaffold_7G00206220 Rroxscaffold_7G00206240 Rroxscaffold_7G00206350 Rroxscaffold_7G00206360 Rroxscaffold_7G00206400 Rroxscaffold_7G00206410
rosa_rugosa Rorug01G0144000.1 Rorug05G0584600 Rorug05G0584700 Rorug06G0354800
rosa_samantha Rh1AG160400 Rh1BG127600 Rh1BG127700 Rh1CG150000 Rh1CG150100 Rh1DG163800 Rh1DG163900 Rh2BG049500 Rh6AG101000 Rh6AG101100 Rh6AG466600 Rh6BG093000 Rh6BG093100 Rh6BG093200 Rh6BG434400 Rh6CG090200 Rh6CG090300 Rh6CG090400 Rh6CG090600 Rh6CG481600 Rh6DG084400 Rh6DG084500 Rh6DG467900
rosa_wichuraiana Rw1G013430 Rw1G013440 Rw1G013450 Rw1G013460 Rw1G013470 Rw6G008770 Rw6G008780 Rw6G008790 Rw6G040650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 450
AciI CCGC 2 cut(s) 330, 450
AclWI GGATC 1 cut(s) 209
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 132, 323
AflII CTTAAG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 64, 208
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 3 cut(s) 273, 360, 445
AluI AGCT 3 cut(s) 273, 360, 445
Alw21I GWGCWC 2 cut(s) 354, 403
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 34, 364
AspS9I GGNCC 2 cut(s) 71, 98
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 2 cut(s) 71, 98
BbsI GAAGAC 1 cut(s) 427
Bbv12I GWGCWC 2 cut(s) 354, 403
BbvI GCAGC 2 cut(s) 46, 376
BccI CCATC 2 cut(s) 298, 407
BceAI ACGGC 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 289
BisI GCNGC 3 cut(s) 35, 365, 451
BlsI GCNGC 3 cut(s) 36, 366, 452
Bme18I GGWCC 2 cut(s) 71, 98
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 71, 98
BmiI GGNNCC 2 cut(s) 100, 124
BpiI GAAGAC 1 cut(s) 427
BpmI CTGGAG 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 323
Bse1I ACTGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 132, 323
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 46, 376
BseYI CCCAGC 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 354, 403
BslI CCNNNNNNNGG 2 cut(s) 132, 323
BsmAI GTCTC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 354, 403
Bsp143I GATC 2 cut(s) 108, 214
BspACI CCGC 2 cut(s) 330, 450
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 100, 124
BspPI GGATC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 108, 214
Bst4CI ACNGT 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 289
BstC8I GCNNGC 3 cut(s) 362, 389, 455
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 2 cut(s) 111, 217
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 108, 214
BstMWI GCNNNNNNNGC 2 cut(s) 291, 336
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 46, 376
BstV2I GAAGAC 1 cut(s) 427
BstXI CCANNNNNNTGG 2 cut(s) 267, 307
BtgI CCRYGG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 362, 389, 455
Cfr13I GGNCC 2 cut(s) 71, 98
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 392
CviJI RGCY 9 cut(s) 54, 123, 273, 294, 339, 360, 367, 445, 453
CviKI_1 RGCY 9 cut(s) 54, 123, 273, 294, 339, 360, 367, 445, 453
CviQI GTAC 1 cut(s) 250
DpnI GATC 2 cut(s) 110, 216
DpnII GATC 2 cut(s) 108, 214
DraIII CACNNNGTG 1 cut(s) 247
EciI GGCGGA 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 71, 98
EcoO109I RGGNCCY 1 cut(s) 98
FaeI CATG 1 cut(s) 395
FaiI YATR 6 cut(s) 76, 141, 153, 213, 278, 393
FatI CATG 1 cut(s) 391
Fnu4HI GCNGC 3 cut(s) 35, 365, 451
FokI GGATG 1 cut(s) 4
Fsp4HI GCNGC 3 cut(s) 35, 365, 451
FspBI CTAG 1 cut(s) 200
GluI GCNGC 3 cut(s) 35, 365, 451
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 289
Hin1II CATG 1 cut(s) 395
HindIII AAGCTT 1 cut(s) 443
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 190, 250
Hpy188I TCNGA 2 cut(s) 127, 318
Hpy188III TCNNGA 2 cut(s) 268, 355
Hpy8I GTNNAC 2 cut(s) 190, 250
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 2 cut(s) 186, 235
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 336
HpySE526I ACGT 2 cut(s) 186, 235
Hsp92II CATG 1 cut(s) 395
Kzo9I GATC 2 cut(s) 108, 214
LmnI GCTCC 2 cut(s) 128, 270
LpnPI CCDG 6 cut(s) 23, 36, 40, 253, 346, 439
Lsp1109I GCAGC 2 cut(s) 46, 376
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 186, 235
MalI GATC 2 cut(s) 110, 216
MboI GATC 2 cut(s) 108, 214
MboII GAAGA 2 cut(s) 421, 427
MhlI GDGCHC 2 cut(s) 354, 403
MluCI AATT 1 cut(s) 130
MmeI TCCRAC 2 cut(s) 45, 341
MnlI CCTC 6 cut(s) 92, 187, 249, 275, 320, 417
MseI TTAA 3 cut(s) 147, 168, 290
MslI CAYNNNNRTG 1 cut(s) 396
MspCI CTTAAG 1 cut(s) 289
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 2 cut(s) 291, 336
NdeII GATC 2 cut(s) 108, 214
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 2 cut(s) 100, 124
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PkrI GCNGC 3 cut(s) 36, 366, 452
PpuMI RGGWCCY 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 100, 124
PspPI GGNCC 2 cut(s) 71, 98
PspPPI RGGWCCY 1 cut(s) 98
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 3 cut(s) 147, 168, 290
SatI GCNGC 3 cut(s) 35, 365, 451
Sau3AI GATC 2 cut(s) 108, 214
Sau96I GGNCC 2 cut(s) 71, 98
SduI GDGCHC 2 cut(s) 354, 403
SetI ASST 8 cut(s) 84, 189, 238, 267, 275, 362, 428, 447
SinI GGWCC 2 cut(s) 71, 98
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 289, 353
SmoI CTYRAG 2 cut(s) 289, 353
Sse9I AATT 1 cut(s) 130
SsiI CCGC 2 cut(s) 330, 450
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 2 cut(s) 189, 238
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 453
Tru1I TTAA 3 cut(s) 147, 168, 290
Tru9I TTAA 3 cut(s) 147, 168, 290
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 34, 364
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 71, 98
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.